myRT

myRT report for GCA_001756585.1_ASM175658v1

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Seq: LZTO01000072.1 Pseudomonas aeruginosa strain HPA 4 scaffold8.1, whole genome shotgun sequence (260316 bp)
Overview 1 RT 1: 253496-260020 bp Neighborhood of RT #1 [253496, 260316] COG4271 CHD CHD RVT-GII GIIM DUF772 Feature: gene Location: 253496-254407 bp Ori: OFC20185.1 Feature: domain Description: COG4271 Location: 253721-254390 bp Feature: domain Description: COG4271 Location: 253721 -254390 bp Feature: gene Location: 254488-256032 bp Ori: OFC20171.1 Feature: domain Description: CHD Location: 254704-255118 bp Feature: domain Description: CHD Location: 254704-2551 1 8 bp Feature: domain Description: CHD Location: 255346-255835 bp Feature: domain Description: CHD Location: 255346-255835 bp Feature: gene Location: 258027-259295 bp Ori: OFC20172.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258240-258897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258240-258897 bp Feature: domain Description: GIIM Note: maturase Location: 258975-259197 bp Feature: domain Description: GIIM Note: maturase Location: 258975-2591 97 bp Feature: gene Location: 259684-260316 bp Ori: OFC20173.1 Feature: domain Description: DUF772 Location: 259825-260020 bp Feature: domain Description: DUF772 Location: 259825-260020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)

Seq: LZTO01000030.1 Pseudomonas aeruginosa strain HPA 4 scaffold36.1, whole genome shotgun sequence (36463 bp)
Overview 1 RT 1: 2046-9357 bp Neighborhood of RT #1 [2046, 10412] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Feature: gene Location: 2046-3185 bp Ori: OFC26302.1 Feature: domain Description: AAA_21 Location: 2118-2187 bp Feature: domain Description: AAA_2 1 Location: 2 118-2 187 bp Feature: domain Description: AAA_21 Location: 2661-2991 bp Feature: domain Description: AAA_2 1 Location: 2 661-2 991 bp Feature: gene Location: 3185-3742 bp Feature: gene Location: 3739-6759 bp Ori: OFC26304.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4234-4705 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 42 34-4705 bp Feature: gene Location: 7566-8537 bp Ori: OFC26317.1 Feature: domain Description: YeeA Location: 7623-8403 bp Feature: domain Description: YeeA Location: 762 3-8403 bp Feature: gene Location: 8541-10412 bp Ori: OFC26305.1 Feature: domain Description: DUF262 Location: 8589-9357 bp Feature: domain Description: DUF2 62 Location: 8589-9357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235)

Seq: LZTO01000056.1 Pseudomonas aeruginosa strain HPA 4 scaffold6.1, whole genome shotgun sequence (377749 bp)
Overview 1 RT 1: 49563-58404 bp 2 RT 2: 74668-85338 bp Neighborhood of RT #1 [49563, 58412] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74668, 85403] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 49563-50237 bp Ori: OFC22442.1 Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: domain Description: NTP_transferase_like_1 Location: 49569-50208 bp Feature: gene Location: 50234-51250 bp Ori: OFC22443.1 Feature: domain Description: COG3178 Location: 50237-51236 bp Feature: domain Description: COG3 178 Location: 5023 7-5123 6 bp Feature: gene Location: 52523-54235 bp Ori: OFC22444.1 Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: domain Description: RVT_N Location: 52580-52823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52868-53 504 bp Feature: domain Description: YkfC Location: 53714-53864 bp Feature: domain Description: YkfC Location: 53 714-53 864 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: domain Description: HNH Note: nucleases Location: 54041-54179 bp Feature: gene Location: 54368-57139 bp Ori: OFC22445.1 Feature: domain Description: LptD Location: 54563-57125 bp Feature: domain Description: LptD Location: 54563 -57125 bp Feature: gene Location: 57120-58412 bp Ori: OFC22446.1 Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: domain Description: PRK10770 Location: 57210-58404 bp Feature: gene Location: 74668-76521 bp Ori: OFC22464.1 Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: domain Description: PRK05658 Location: 74680-76519 bp Feature: gene Location: 76628-80365 bp Ori: OFC22465.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76736-77393 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7673 6-773 93 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PRK09776 Location: 77606-78077 bp Feature: domain Description: PAS Location: 78134-78659 bp Feature: domain Description: PAS Location: 7813 4-78659 bp Feature: domain Description: PRK10060 Location: 78671-80315 bp Feature: domain Description: PRK10060 Location: 78671-803 15 bp Feature: gene Location: 81446-83131 bp Ori: OFC22466.1 Feature: domain Description: RVT_N Location: 81503-81743 bp Feature: domain Description: RVT_N Location: 81503 -81743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81791-82427 bp Feature: domain Description: GIIM Note: maturase Location: 82481-82712 bp Feature: domain Description: GIIM Note: maturase Location: 82481-82712 bp Feature: domain Description: HNH Note: nucleases Location: 82964-83102 bp Feature: domain Description: HNH Note: nucleases Location: 82964-83 102 bp Feature: gene Location: 83854-84975 bp Ori: OFC22467.1 Feature: domain Description: COG3177 Location: 83872-84964 bp Feature: domain Description: COG3 177 Location: 83 872-84964 bp Feature: gene Location: 85068-85403 bp Feature: domain Description: NERD Location: 85167-85338 bp Feature: domain Description: NERD Location: 85167-853 3 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)