myRT

myRT report for GCA_001756675.1_ASM175667v1

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Seq: LZYE01000077.1 Acidithiobacillus caldus strain DX Contig077, whole genome shotgun sequence (12434 bp)
Overview 1 RT 1: 10062-11960 bp Neighborhood of RT #1 [10062, 12434] COG4453 PhnO RVT-Retrons Feature: gene Location: 10062-10373 bp Ori: OFC37539.1 Feature: domain Description: COG4453 Location: 10080-10332 bp Feature: domain Description: COG4453 Location: 1 0080-1 0332 bp Feature: gene Location: 10342-10833 bp Ori: OFC37540.1 Feature: domain Description: PhnO Location: 10528-10777 bp Feature: domain Description: PhnO Location: 1 0528-1 0777 bp Feature: gene Location: 11300-12434 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11336-11960 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 336-1 1 960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4453 (Uncharacterized conserved protein, DUF1778 family ), PhnO (COG0454), RVT-Retrons

Seq: LZYE01000033.1 Acidithiobacillus caldus strain DX Contig033, whole genome shotgun sequence (3125 bp)
Overview 1 RT 1: 385-3125 bp Neighborhood of RT #1 [385, 3125] RVT-GII GIIM Feature: gene Location: 385-1719 bp Ori: OFC38494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682-1345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682 -1345 bp Feature: domain Description: GIIM Note: maturase Location: 1414-1621 bp Feature: domain Description: GIIM Note: maturase Location: 1414-162 1 bp Feature: gene Location: 2871-3125 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LZYE01000162.1 Acidithiobacillus caldus strain DX Contig162, whole genome shotgun sequence (37205 bp)
Overview 1 RT 1: 17730-23284 bp Neighborhood of RT #1 [17730, 23284] RVT-GII GIIM ssb Feature: gene Location: 17730-18014 bp Feature: gene Location: 18238-19593 bp Feature: gene Location: 19757-21088 bp Ori: OFC36390.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20060-20693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20060-20693 bp Feature: domain Description: GIIM Note: maturase Location: 20765-20987 bp Feature: domain Description: GIIM Note: maturase Location: 20765-20987 bp Feature: gene Location: 21799-22134 bp Feature: domain Description: ssb Location: 21802-22129 bp Feature: domain Description: ssb Location: 21802-22129 bp Feature: gene Location: 22496-23284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ssb (TIGR00621)

Seq: LZYE01000340.1 Acidithiobacillus caldus strain DX Contig340, whole genome shotgun sequence (8625 bp)
Overview 1 RT 1: 1358-5973 bp Neighborhood of RT #1 [1358, 5993] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csm6_III-A CRISPR_Cas6 Feature: gene Location: 1358-1636 bp Ori: OFC30307.1 Feature: domain Description: Cas2_I_II_III Location: 1367-1583 bp Feature: domain Description: Cas2_I_II_III Location: 1367-1583 bp Feature: gene Location: 1934-3940 bp Ori: OFC30308.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2147-2747 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 214 7-274 7 bp Feature: domain Description: Cas1_I-II-III Location: 2945-3902 bp Feature: domain Description: Cas1_I-II-III Location: 294 5-3902 bp Feature: gene Location: 3952-5055 bp Ori: OFC30309.1 Feature: domain Description: Csm6_III-A Location: 4084-4582 bp Feature: domain Description: Csm6_III-A Location: 4 084 -4 582 bp Feature: gene Location: 5061-5993 bp Ori: OFC30310.1 Feature: domain Description: CRISPR_Cas6 Location: 5634-5973 bp Feature: domain Description: CRISPR_Cas6 Location: 5634 -5973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csm6_III-A (cl19028), CRISPR_Cas6 (pfam10040)