myRT

myRT report for GCA_001756725.1_ASM175672v1

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Seq: LZYF01000077.1 Acidithiobacillus caldus strain ZBY Contig077, whole genome shotgun sequence (9373 bp)
Overview 1 RT 1: 30-6705 bp Neighborhood of RT #1 [30, 6725] IstB_IS21 Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csm6_III-A CRISPR_Cas6 Feature: gene Location: 30-692 bp Ori: OFC39193.1 Feature: domain Description: IstB_IS21 Location: 66-597 bp Feature: domain Description: IstB_IS21 Location: 66-597 bp Feature: gene Location: 2090-2368 bp Ori: OFC39185.1 Feature: domain Description: Cas2_I_II_III Location: 2099-2315 bp Feature: domain Description: Cas2_I_II_III Location: 2099-231 5 bp Feature: gene Location: 2666-4672 bp Ori: OFC39186.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2879-3479 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2879-3479 bp Feature: domain Description: Cas1_I-II-III Location: 3677-4634 bp Feature: domain Description: Cas1 _I-II-III Location: 3677-4634 bp Feature: gene Location: 4684-5787 bp Ori: OFC39187.1 Feature: domain Description: Csm6_III-A Location: 4816-5314 bp Feature: domain Description: Csm6_III-A Location: 481 6-531 4 bp Feature: gene Location: 5793-6725 bp Ori: OFC39188.1 Feature: domain Description: CRISPR_Cas6 Location: 6366-6705 bp Feature: domain Description: CRISPR_Cas6 Location: 6366-6705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csm6_III-A (cl19028), CRISPR_Cas6 (pfam10040)

Seq: LZYF01000041.1 Acidithiobacillus caldus strain ZBY Contig041, whole genome shotgun sequence (4011 bp)
Overview 1 RT 1: 1-3361 bp Neighborhood of RT #1 [1, 3969] HTH_7 RVT-GII GIIM HNHc Feature: gene Location: 1-688 bp Feature: domain Description: HTH_7 Location: 58-163 bp Feature: domain Description: HTH_7 Location: 58-163 bp Feature: gene Location: 1693-3027 bp Ori: OFC39652.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990-2653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990-2 653 bp Feature: domain Description: GIIM Note: maturase Location: 2722-2929 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 2 -2 92 9 bp Feature: gene Location: 3232-3969 bp Ori: OFC39653.1 Feature: domain Description: HNHc Note: nucleases Location: 3238-3361 bp Feature: domain Description: HNHc Note: nucleases Location: 32 38-3361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_7 (pfam02796), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LZYF01000002.1 Acidithiobacillus caldus strain ZBY Contig002, whole genome shotgun sequence (38734 bp)
Overview 1 RT 1: 17747-23301 bp Neighborhood of RT #1 [17747, 23301] RVT-GII GIIM ssb Feature: gene Location: 17747-18031 bp Feature: gene Location: 18255-19610 bp Feature: gene Location: 19774-21105 bp Ori: OFC40456.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20077-20710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20077-20710 bp Feature: domain Description: GIIM Note: maturase Location: 20782-21004 bp Feature: domain Description: GIIM Note: maturase Location: 20782-21004 bp Feature: gene Location: 21816-22151 bp Feature: domain Description: ssb Location: 21819-22146 bp Feature: domain Description: ssb Location: 21819-22146 bp Feature: gene Location: 22513-23301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ssb (TIGR00621)

Seq: LZYF01000170.1 Acidithiobacillus caldus strain ZBY Contig170, whole genome shotgun sequence (9896 bp)
Overview 1 RT 1: 553-3390 bp Neighborhood of RT #1 [553, 3431] RVT-Retrons PhnO COG4453 Feature: gene Location: 553-2292 bp Ori: OFC37016.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 688-1312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 688-1312 bp Feature: gene Location: 2660-3151 bp Ori: OFC37017.1 Feature: domain Description: PhnO Location: 2846-3095 bp Feature: domain Description: PhnO Location: 284 6-3095 bp Feature: gene Location: 3120-3431 bp Ori: OFC37018.1 Feature: domain Description: COG4453 Location: 3138-3390 bp Feature: domain Description: COG4 4 53 Location: 3138-3390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PhnO (COG0454), COG4453 (Uncharacterized conserved protein, DUF1778 family )