myRT

myRT report for GCA_001756745.1_ASM175674v1

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Seq: LZYG01000033.1 Acidithiobacillus caldus strain ZJ Contig033, whole genome shotgun sequence (3913 bp)
Overview 1 RT 1: 27-3913 bp Neighborhood of RT #1 [27, 3913] HNHc RVT-GII GIIM Feature: gene Location: 27-764 bp Ori: OFC41746.1 Feature: domain Description: HNHc Note: nucleases Location: 33-156 bp Feature: domain Description: HNHc Note: nucleases Location: 33-1 56 bp Feature: gene Location: 969-2303 bp Ori: OFC41747.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1266-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 266-1 929 bp Feature: domain Description: GIIM Note: maturase Location: 1998-2205 bp Feature: domain Description: GIIM Note: maturase Location: 1 998-2205 bp Feature: gene Location: 3308-3913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT-GII, GIIM (pfam08388)

Seq: LZYG01000173.1 Acidithiobacillus caldus strain ZJ Contig173, whole genome shotgun sequence (11955 bp)
Overview 1 RT 1: 1-1853 bp Neighborhood of RT #1 [1, 1894] RVT-Retrons PhnO COG4453 Feature: gene Location: 1-656 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37-649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37-649 bp Feature: gene Location: 1123-1614 bp Ori: OFC39468.1 Feature: domain Description: PhnO Location: 1309-1558 bp Feature: domain Description: PhnO Location: 1309-1558 bp Feature: gene Location: 1583-1894 bp Ori: OFC39469.1 Feature: domain Description: COG4453 Location: 1601-1853 bp Feature: domain Description: COG4453 Location: 1601-1853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PhnO (COG0454), COG4453 (Uncharacterized conserved protein, DUF1778 family )

Seq: LZYG01000374.1 Acidithiobacillus caldus strain ZJ Contig374, whole genome shotgun sequence (46958 bp)
Overview 1 RT 1: 25949-31503 bp Neighborhood of RT #1 [25949, 31503] RVT-GII GIIM ssb Feature: gene Location: 25949-26233 bp Feature: gene Location: 26457-27812 bp Feature: gene Location: 27976-29307 bp Ori: OFC35541.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28279-28912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28279-28912 bp Feature: domain Description: GIIM Note: maturase Location: 28984-29206 bp Feature: domain Description: GIIM Note: maturase Location: 28984-29206 bp Feature: gene Location: 30018-30353 bp Feature: domain Description: ssb Location: 30021-30348 bp Feature: domain Description: ssb Location: 3 0021-3 03 48 bp Feature: gene Location: 30715-31503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ssb (TIGR00621)

Seq: LZYG01000250.1 Acidithiobacillus caldus strain ZJ Contig250, whole genome shotgun sequence (7386 bp)
Overview 1 RT 1: 1313-5928 bp Neighborhood of RT #1 [1313, 5948] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Csm6_III-A CRISPR_Cas6 Feature: gene Location: 1313-1591 bp Ori: OFC37598.1 Feature: domain Description: Cas2_I_II_III Location: 1322-1538 bp Feature: domain Description: Cas2_I_II_III Location: 1322-1538 bp Feature: gene Location: 1889-3895 bp Ori: OFC37599.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2102-2702 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2102-2702 bp Feature: domain Description: Cas1_I-II-III Location: 2900-3857 bp Feature: domain Description: Cas1_I-II-III Location: 2900-3857 bp Feature: gene Location: 3907-5010 bp Ori: OFC37600.1 Feature: domain Description: Csm6_III-A Location: 4039-4537 bp Feature: domain Description: Csm6_III-A Location: 4 039-4 537 bp Feature: gene Location: 5016-5948 bp Ori: OFC37601.1 Feature: domain Description: CRISPR_Cas6 Location: 5589-5928 bp Feature: domain Description: CRISPR_Cas6 Location: 5589-5928 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Csm6_III-A (cl19028), CRISPR_Cas6 (pfam10040)