myRT

myRT report for GCA_001757105.1_ASM175710v1

Download annotations/find similar RTs

Seq: MDHN01000039.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S44, whole genome shotgun sequence (127271 bp)
Overview 1 RT 1: 1-3105 bp Neighborhood of RT #1 [1, 3125] RVT-GII GIIM DapA CAD1 Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 421 -646 bp Feature: gene Location: 966-1859 bp Ori: OFC69486.1 Feature: domain Description: DapA Location: 969-1842 bp Feature: domain Description: DapA Location: 969-1 842 bp Feature: gene Location: 2079-3125 bp Ori: OFC69487.1 Feature: domain Description: CAD1 Location: 2094-3105 bp Feature: domain Description: CAD1 Location: 2094-31 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DapA (COG0329), CAD1 (cd05283)

Seq: MDHN01000036.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S41, whole genome shotgun sequence (40387 bp)
Overview 1 RT 1: 34973-39926 bp Neighborhood of RT #1 [34973, 39926] groEL HNH_2 RVT-GII Feature: gene Location: 34973-36616 bp Ori: OFC69845.1 Feature: domain Description: groEL Location: 34979-36599 bp Feature: domain Description: groEL Location: 34979-36599 bp Feature: gene Location: 36785-37690 bp Ori: OFC69846.1 Feature: domain Description: HNH_2 Location: 37346-37505 bp Feature: domain Description: HNH_2 Location: 37346-37505 bp Feature: gene Location: 38444-38779 bp Ori: OFC69847.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38657-38729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38657-3872 9 bp Feature: gene Location: 39130-39324 bp Feature: gene Location: 39354-39926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), HNH_2 (pfam13391), RVT-GII

Seq: MDHN01000007.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S15, whole genome shotgun sequence (51554 bp)
Overview 1 RT 1: 1-2494 bp Neighborhood of RT #1 [1, 2499] RVT-GII GIIM YhaK PRK09483 Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-3 70 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: gene Location: 1049-1741 bp Ori: OFC72169.1 Feature: domain Description: YhaK Location: 1052-1733 bp Feature: domain Description: YhaK Location: 1052-173 3 bp Feature: gene Location: 1855-2499 bp Ori: OFC72214.1 Gene: sirA Feature: domain Description: PRK09483 Location: 1858-2494 bp Feature: domain Description: PRK09483 Location: 1858-2494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YhaK (COG1741), PRK09483 (response regulator; Provisional)

Seq: MDHN01000008.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S16, whole genome shotgun sequence (223812 bp)
Overview 1 RT 1: 1-4812 bp Neighborhood of RT #1 [1, 4817] RVT-GII GIIM CarboxypepD_reg ElaA Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 4 21-64 6 bp Feature: gene Location: 1324-4275 bp Ori: OFC71967.1 Feature: domain Description: CarboxypepD_reg Location: 1411-1633 bp Feature: domain Description: CarboxypepD_reg Location: 14 11-1633 bp Feature: gene Location: 4365-4817 bp Ori: OFC71968.1 Feature: domain Description: ElaA Location: 4371-4812 bp Feature: domain Description: ElaA Location: 4 371-4 812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CarboxypepD_reg (pfam13620), ElaA (COG2153)

Seq: MDHN01000037.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S42, whole genome shotgun sequence (243717 bp)
Overview 1 RT 1: 1-4729 bp Neighborhood of RT #1 [1, 4794] RVT-GII GIIM M20_Acy1-like PRK09928 Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: gene Location: 1062-2393 bp Ori: OFC69614.1 Feature: domain Description: M20_Acy1-like Location: 1176-2379 bp Feature: domain Description: M20_Acy1-like Location: 1176-2379 bp Feature: gene Location: 2764-4794 bp Ori: OFC69615.1 Feature: domain Description: PRK09928 Location: 2785-4729 bp Feature: domain Description: PRK09928 Location: 2785 -4729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), M20_Acy1-like (cd08660), PRK09928 (choline transport protein BetT; Provisional)

Seq: MDHN01000015.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S22, whole genome shotgun sequence (301182 bp)
Overview 1 RT 1: 260-8823 bp Neighborhood of RT #1 [260, 8873] GAF BaeS ComEB RVT-Retrons Trypsin_2 TonB-hemin RDD Feature: gene Location: 260-1444 bp Ori: OFC71164.1 Feature: domain Description: GAF Location: 362-671 bp Feature: domain Description: GAF Location: 36 2-6 71 bp Feature: domain Description: BaeS Location: 689-1436 bp Feature: domain Description: BaeS Location: 6 89-1436 bp Feature: gene Location: 1729-3729 bp Ori: OFC71165.1 Feature: domain Description: ComEB Location: 2392-3025 bp Feature: domain Description: ComEB Location: 2392-3025 bp Feature: gene Location: 3856-5493 bp Ori: OFC71166.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3994-4597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3994-4597 bp Feature: domain Description: Trypsin_2 Location: 4984-5410 bp Feature: domain Description: Trypsin_2 Location: 4984-5410 bp Feature: gene Location: 6086-8071 bp Ori: OFC71167.1 Feature: domain Description: TonB-hemin Location: 6206-8069 bp Feature: domain Description: TonB-hemin Location: 6 206 -806 9 bp Feature: gene Location: 8430-8873 bp Ori: OFC71384.1 Feature: domain Description: RDD Location: 8436-8823 bp Feature: domain Description: RDD Location: 8436 -8823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GAF (smart00065), BaeS (COG0642), ComEB (TIGR02571), RVT-Retrons, Trypsin_2 (pfam13365), TonB-hemin (TIGR01785), RDD (pfam06271)

Seq: MDHN01000009.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S17, whole genome shotgun sequence (82770 bp)
Overview 1 RT 1: 1-3823 bp Neighborhood of RT #1 [1, 3843] RVT-GII GIIM PQQ_membr_DH Flavodoxin_2 Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 -37 0 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: gene Location: 900-3284 bp Ori: OFC71902.1 Feature: domain Description: PQQ_membr_DH Location: 1008-3282 bp Feature: domain Description: PQQ_membr_DH Location: 1008-3282 bp Feature: gene Location: 3298-3843 bp Ori: OFC71955.1 Feature: domain Description: Flavodoxin_2 Location: 3349-3823 bp Feature: domain Description: Flavodoxin_2 Location: 3349-3823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PQQ_membr_DH (TIGR03074), Flavodoxin_2 (pfam02525)

Seq: MDHN01000021.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S28, whole genome shotgun sequence (277932 bp)
Overview 1 RT 1: 274397-277771 bp Neighborhood of RT #1 [274397, 277932] PRK08974 KOG1454 RVT-GII GIIM Feature: gene Location: 274397-276049 bp Ori: OFC71024.1 Feature: domain Description: PRK08974 Location: 274403-276047 bp Feature: domain Description: PRK08 974 Location: 274403-276047 bp Feature: gene Location: 276172-277011 bp Ori: OFC71047.1 Feature: domain Description: KOG1454 Location: 276226-277006 bp Feature: domain Description: KOG1454 Location: 276226-277006 bp Feature: gene Location: 277126-277932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277132-277495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 277132-277495 bp Feature: domain Description: GIIM Note: maturase Location: 277546-277771 bp Feature: domain Description: GIIM Note: maturase Location: 277546-277771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08974 (long-chain-fatty-acid--CoA ligase FadD), KOG1454 (KOG1454, Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) ), RVT-GII, GIIM (pfam08388)

Seq: MDHN01000005.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S13, whole genome shotgun sequence (158786 bp)
Overview 1 RT 1: 1-5593 bp Neighborhood of RT #1 [1, 5643] RVT-GII GIIM PRK11359 GGDEF EAL PrpE Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: gene Location: 1189-3600 bp Ori: OFC72280.1 Feature: domain Description: PRK11359 Location: 1783-2251 bp Feature: domain Description: PRK11359 Location: 1783-2251 bp Feature: domain Description: GGDEF Location: 2281-2758 bp Feature: domain Description: GGDEF Location: 2281-2758 bp Feature: domain Description: EAL Location: 2833-3538 bp Feature: domain Description: EAL Location: 2833-3538 bp Feature: gene Location: 3742-5643 bp Ori: OFC72281.1 Gene: prpE Feature: domain Description: PrpE Location: 3751-5593 bp Feature: domain Description: PrpE Location: 3751-559 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), GGDEF (TIGR00254), EAL (smart00052), PrpE (cd05967)

Seq: MDHN01000004.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S12, whole genome shotgun sequence (233470 bp)
Overview 1 RT 1: 231765-233309 bp Neighborhood of RT #1 [231765, 233470] DUF820 RVT-GII GIIM Feature: gene Location: 231765-232352 bp Ori: OFC72565.1 Feature: domain Description: DUF820 Location: 231843-232251 bp Feature: domain Description: DUF820 Location: 231843-232251 bp Feature: gene Location: 232385-232585 bp Feature: gene Location: 232664-233470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232670-233033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232670-233033 bp Feature: domain Description: GIIM Note: maturase Location: 233084-233309 bp Feature: domain Description: GIIM Note: maturase Location: 233084-233309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF820, RVT-GII, GIIM (pfam08388)

Seq: MDHN01000017.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S24, whole genome shotgun sequence (4083 bp)
Overview 1 RT 1: 1-3922 bp Neighborhood of RT #1 [1, 4083] ovoA_Nterm ovoA_Cterm RVT-GII GIIM Feature: gene Location: 1-193 bp Feature: gene Location: 534-2633 bp Ori: OFC71122.1 Feature: domain Description: ovoA_Nterm Location: 552-1860 bp Feature: domain Description: ovoA_Nterm Location: 552-1860 bp Feature: domain Description: ovoA_Cterm Location: 1899-2625 bp Feature: domain Description: ovoA_Cterm Location: 1899-2625 bp Feature: gene Location: 3277-4083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3283-3646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3283-3646 bp Feature: domain Description: GIIM Note: maturase Location: 3697-3922 bp Feature: domain Description: GIIM Note: maturase Location: 3697-3922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ovoA_Nterm (TIGR04344), ovoA_Cterm (TIGR04345), RVT-GII, GIIM (pfam08388)

Seq: MDHN01000006.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S14, whole genome shotgun sequence (79734 bp)
Overview 1 RT 1: 1-4441 bp Neighborhood of RT #1 [1, 4491] RVT-GII GIIM ligand_gated_channel RpoE Feature: gene Location: 1-807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-370 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: domain Description: GIIM Note: maturase Location: 421-646 bp Feature: gene Location: 1218-3788 bp Ori: OFC72219.1 Feature: domain Description: ligand_gated_channel Location: 1410-3696 bp Feature: domain Description: ligand_gated_channel Location: 1410-3696 bp Feature: gene Location: 3931-4491 bp Ori: OFC72220.1 Feature: domain Description: RpoE Location: 3946-4441 bp Feature: domain Description: RpoE Location: 3946-4441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ligand_gated_channel (cd01347), RpoE (COG3343)

Seq: MDHN01000043.1 Alteromonas confluentis strain KCTC 42603 Alteromonas_confluentis_KCTC42603_S6, whole genome shotgun sequence (92661 bp)
Overview 1 RT 1: 90140-92500 bp Neighborhood of RT #1 [90140, 92661] RVT-GII GIIM Feature: gene Location: 90140-90808 bp Feature: gene Location: 90808-91488 bp Feature: gene Location: 91855-92661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91861-92224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91861-92224 bp Feature: domain Description: GIIM Note: maturase Location: 92275-92500 bp Feature: domain Description: GIIM Note: maturase Location: 92275-92500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)