myRT

myRT report for GCA_001758365.1_ASM175836v1

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Seq: LZFO01000024.1 Clostridium acetireducens DSM 10703 CLAC_contig000024, whole genome shotgun sequence (39597 bp)
Overview 1 RT 1: 2825-10869 bp Neighborhood of RT #1 [2825, 10913] CO_DH_cata PRK07726 RVT-GII HNHc PRK07726 FmnP Feature: gene Location: 2825-4738 bp Ori: OFI05529.1 Gene: cooS2 Feature: domain Description: CO_DH_cata Location: 2867-4733 bp Feature: domain Description: CO_DH_cata Location: 2867-4733 bp Feature: gene Location: 5220-6335 bp Ori: OFI05530.1 Gene: topB_1 Feature: domain Description: PRK07726 Location: 5229-6318 bp Feature: domain Description: PRK07726 Location: 5229-631 8 bp Feature: gene Location: 7394-8719 bp Ori: OFI05531.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7397-7898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7397-7898 bp Feature: domain Description: HNHc Note: nucleases Location: 8444-8609 bp Feature: domain Description: HNHc Note: nucleases Location: 8444-8609 bp Feature: gene Location: 8832-9959 bp Ori: OFI05532.1 Gene: topB_2 Feature: domain Description: PRK07726 Location: 8865-9744 bp Feature: domain Description: PRK07726 Location: 8865-9744 bp Feature: gene Location: 10338-10913 bp Ori: OFI05533.1 Gene: ribU Feature: domain Description: FmnP Location: 10341-10869 bp Feature: domain Description: FmnP Location: 1 0341 -1 0869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CO_DH_cata (TIGR01702), PRK07726 (DNA topoisomerase 3), RVT-GII, HNHc (smart00507), FmnP (COG3601)

Seq: LZFO01000005.1 Clostridium acetireducens DSM 10703 CLAC_contig000005, whole genome shotgun sequence (96596 bp)
Overview 1 RT 1: 3970-9728 bp Neighborhood of RT #1 [3970, 9784] TPR TPR Cas_Cas1 Cas_Cas1 RVT-UNC RVT-CRISPR AE_Prim_S_like comF Smf Feature: gene Location: 3970-4818 bp Ori: OFI07049.1 Feature: domain Description: TPR Location: 4027-4204 bp Feature: domain Description: TPR Location: 402 7-42 04 bp Feature: domain Description: TPR Location: 4501-4693 bp Feature: domain Description: TPR Location: 4501-4693 bp Feature: gene Location: 4872-5222 bp Ori: OFI07050.1 Gene: cas1_1 Feature: domain Description: Cas_Cas1 Location: 4884-5217 bp Feature: domain Description: Cas_Cas1 Location: 4884-52 17 bp Feature: gene Location: 5223-5894 bp Ori: OFI07051.1 Gene: cas1_2 Feature: domain Description: Cas_Cas1 Location: 5250-5703 bp Feature: domain Description: Cas_Cas1 Location: 52 50-5703 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 5733-5874 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 5733-5874 bp Feature: gene Location: 5899-7710 bp Ori: OFI07052.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5944-6166 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5944-6166 bp Feature: domain Description: AE_Prim_S_like Location: 6604-6919 bp Feature: domain Description: AE_Prim_S_like Location: 6604-6919 bp Feature: gene Location: 8231-8821 bp Ori: OFI07053.1 Gene: pyrE_1 Feature: domain Description: comF Location: 8348-8786 bp Feature: domain Description: comF Location: 8348-8786 bp Feature: gene Location: 8834-9784 bp Ori: OFI07054.1 Feature: domain Description: Smf Location: 9005-9728 bp Feature: domain Description: Smf Location: 9005-972 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), Cas_Cas1 (pfam01867), RVT-GII/RVT-CRISPR/RVT-UG25(RVT-UNC), RVT-CRISPR, AE_Prim_S_like (cl01287), comF (TIGR00201), Smf (COG0758)