myRT

myRT report for GCA_001758625.1_ASM175862v1

Download annotations/find similar RTs

Seq: LRHZ01000002.1 Janthinobacterium sp. HH102 JAB4_contig000002, whole genome shotgun sequence (540604 bp)
Overview 1 RT 1: 424073-429610 bp 2 RT 2: 431833-435472 bp Neighborhood of RT #1 [424073, 429645] PRK10770 LptD RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [431833, 435510] RVT_N RVT-GII GIIM HNHc COG3178 NTP_transferase_like_1 Feature: gene Location: 424073-425482 bp Feature: domain Description: PRK10770 Location: 424250-425465 bp Feature: domain Description: PRK1 0770 Location: 424250-425465 bp Feature: gene Location: 425571-427871 bp Feature: domain Description: LptD Location: 425676-427788 bp Feature: domain Description: LptD Location: 425676-427788 bp Feature: gene Location: 427945-429645 bp Feature: RT Description: RVT_N Location: 428002-428245 bp Feature: RT Description: RVT_N Location: 428002-428245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428290-428938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428290-428938 bp Feature: domain Description: GIIM Note: maturase Location: 428989-429223 bp Feature: domain Description: GIIM Note: maturase Location: 428989-429223 bp Feature: domain Description: HNH Note: nucleases Location: 429475-429610 bp Feature: domain Description: HNH Note: nucleases Location: 429475-42961 0 bp Feature: gene Location: 431833-433536 bp Feature: RT Description: RVT_N Location: 431893-432136 bp Feature: RT Description: RVT_N Location: 431 893-4321 36 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 432181-432829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4321 81 -432829 bp Feature: domain Description: GIIM Note: maturase Location: 432880-433114 bp Feature: domain Description: GIIM Note: maturase Location: 432880-4331 1 4 bp Feature: domain Description: HNHc Note: nucleases Location: 433348-433498 bp Feature: domain Description: HNHc Note: nucleases Location: 433348-433498 bp Feature: gene Location: 433661-434728 bp Feature: domain Description: COG3178 Location: 433688-434702 bp Feature: domain Description: COG31 78 Location: 433688-434702 bp Feature: gene Location: 434791-435510 bp Feature: domain Description: NTP_transferase_like_1 Location: 434797-435472 bp Feature: domain Description: NTP_transferase_like_1 Location: 434797-435472 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LRHZ01000043.1 Janthinobacterium sp. HH102 JAB4_contig000043, whole genome shotgun sequence (15085 bp)
Overview 1 RT 1: 1398-6409 bp Neighborhood of RT #1 [1398, 6801] RVT-Retrons DEXQc_UvrD DEXQc_UvrD HelD AAA_15 AAA_15 TOPRIM_OLD Feature: gene Location: 1398-3137 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1533-2160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1533-2 160 bp Feature: gene Location: 3672-5069 bp Feature: domain Description: DEXQc_UvrD Location: 3687-3885 bp Feature: domain Description: DEXQc_UvrD Location: 3687-3885 bp Feature: domain Description: DEXQc_UvrD Location: 3933-4131 bp Feature: domain Description: DEXQc_UvrD Location: 3933-4131 bp Feature: domain Description: HelD Location: 4872-5052 bp Feature: domain Description: HelD Location: 4872 -5052 bp Feature: gene Location: 5098-6801 bp Feature: domain Description: AAA_15 Location: 5104-5326 bp Feature: domain Description: AAA_15 Location: 5104-532 6 bp Feature: domain Description: AAA_15 Location: 5707-6049 bp Feature: domain Description: AAA_15 Location: 5707-6049 bp Feature: domain Description: TOPRIM_OLD Location: 6184-6409 bp Feature: domain Description: TOPRIM_OLD Location: 6184-6409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DEXQc_UvrD (cd17932), HelD (COG3973), AAA_15 (pfam13175), TOPRIM_OLD (cd01026)

Seq: LRHZ01000009.1 Janthinobacterium sp. HH102 JAB4_contig000009, whole genome shotgun sequence (248743 bp)
Overview 1 RT 1: 159804-166946 bp Neighborhood of RT #1 [159804, 166946] Zot PulD RVT-Retrons INT_Rci_Hp1_C Feature: gene Location: 159804-160883 bp Feature: domain Description: Zot Location: 159810-160611 bp Feature: domain Description: Zot Location: 159810-160611 bp Feature: gene Location: 160880-162169 bp Feature: domain Description: PulD Location: 161390-162155 bp Feature: domain Description: PulD Location: 1613 90-162155 bp Feature: gene Location: 163775-164779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163976-164525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163 976-164525 bp Feature: gene Location: 164791-165771 bp Feature: domain Description: INT_Rci_Hp1_C Location: 165277-165736 bp Feature: domain Description: INT_Rci_Hp1_C Location: 165277-16573 6 bp Feature: gene Location: 166368-166946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zot (pfam05707), PulD (COG1450), RVT-Retrons, INT_Rci_Hp1_C (cd00796)

Seq: LRHZ01000001.1 Janthinobacterium sp. HH102 JAB4_contig000001, whole genome shotgun sequence (781185 bp)
Overview 1 RT 1: 12572-19136 bp Neighborhood of RT #1 [12572, 19144] PaaY MhpC RVT_N RVT-GII GIIM HNH PHP_HisPPase_AMP PRK05457 Feature: gene Location: 12572-13096 bp Feature: domain Description: PaaY Location: 12596-13088 bp Feature: domain Description: PaaY Location: 12596-13088 bp Feature: gene Location: 13295-14179 bp Feature: domain Description: MhpC Location: 13322-14174 bp Feature: domain Description: MhpC Location: 13322-14 174 bp Feature: gene Location: 15382-17085 bp Feature: RT Description: RVT_N Location: 15442-15685 bp Feature: RT Description: RVT_N Location: 154 4 2-15685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15730-16378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15730-16378 bp Feature: domain Description: GIIM Note: maturase Location: 16429-16663 bp Feature: domain Description: GIIM Note: maturase Location: 164 29-16663 bp Feature: domain Description: HNH Note: nucleases Location: 16915-17050 bp Feature: domain Description: HNH Note: nucleases Location: 16915-17050 bp Feature: gene Location: 17213-18046 bp Feature: domain Description: PHP_HisPPase_AMP Location: 17225-17963 bp Feature: domain Description: PHP_HisPPase_AMP Location: 17225-17963 bp Feature: gene Location: 18260-19144 bp Feature: domain Description: PRK05457 Location: 18263-19136 bp Feature: domain Description: PRK054 57 Location: 18263-19136 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PaaY (TIGR02287), MhpC (COG0596), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PHP_HisPPase_AMP (cd07438), PRK05457 (protease HtpX)

Seq: LRHZ01000032.1 Janthinobacterium sp. HH102 JAB4_contig000032, whole genome shotgun sequence (35203 bp)
Overview 1 RT 1: 26151-31393 bp Neighborhood of RT #1 [26151, 31464] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Rve Beta-lactamase Feature: gene Location: 26151-26444 bp Feature: gene Location: 26720-27706 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26735-27545 bp Feature: domain Description: DDE_Tnp_IS66 Location: 26735 -275 45 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 27566-27677 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 275 66-27677 bp Feature: gene Location: 27756-29003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27960-28617 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27960-28617 bp Feature: domain Description: GIIM Note: maturase Location: 28698-28923 bp Feature: domain Description: GIIM Note: maturase Location: 28698-28923 bp Feature: gene Location: 29668-30360 bp Feature: domain Description: Rve Location: 29680-30286 bp Feature: domain Description: Rve Location: 29680-30286 bp Feature: gene Location: 30421-31464 bp Feature: domain Description: Beta-lactamase Location: 30463-31393 bp Feature: domain Description: Beta-lactamase Location: 30463-31393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), Rve (COG3316), Beta-lactamase (pfam00144)

Seq: LRHZ01000008.1 Janthinobacterium sp. HH102 JAB4_contig000008, whole genome shotgun sequence (270670 bp)
Overview 1 RT 1: 110500-116771 bp Neighborhood of RT #1 [110500, 116779] HMPP_kinase TMP_TenI RVT_N RVT-GII GIIM HNH CheY ANTAR alcohol_DH_class_III Feature: gene Location: 110500-111267 bp Feature: domain Description: HMPP_kinase Location: 110524-111214 bp Feature: domain Description: HMPP_kinase Location: 110524-111214 bp Feature: gene Location: 111278-111901 bp Feature: domain Description: TMP_TenI Location: 111290-111884 bp Feature: domain Description: TMP_TenI Location: 111290-111884 bp Feature: gene Location: 113130-114833 bp Feature: RT Description: RVT_N Location: 113190-113433 bp Feature: RT Description: RVT_N Location: 113190-113433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113478-114126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113478-114126 bp Feature: domain Description: GIIM Note: maturase Location: 114177-114411 bp Feature: domain Description: GIIM Note: maturase Location: 114177-114411 bp Feature: domain Description: HNH Note: nucleases Location: 114663-114801 bp Feature: domain Description: HNH Note: nucleases Location: 1146 6 3-114801 bp Feature: gene Location: 114950-115582 bp Feature: domain Description: CheY Location: 114971-115322 bp Feature: domain Description: CheY Location: 114971-115322 bp Feature: domain Description: ANTAR Location: 115367-115520 bp Feature: domain Description: ANTAR Location: 11536 7-115520 bp Feature: gene Location: 115673-116779 bp Feature: domain Description: alcohol_DH_class_III Location: 115676-116771 bp Feature: domain Description: alcohol_DH_class_III Location: 1156 76 -116 771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HMPP_kinase (cd01169), TMP_TenI (cd00564), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), CheY (COG0784), ANTAR (smart01012), alcohol_DH_class_III (cd08300)