myRT

myRT report for GCA_001758685.1_ASM175868v1

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Seq: LRHY01000039.1 Janthinobacterium sp. HH100 JAB2_contig000039, whole genome shotgun sequence (93847 bp)
Overview 1 RT 1: 46690-53254 bp Neighborhood of RT #1 [46690, 53262] PaaY MhpC RVT_N RVT-GII GIIM HNH PHP_HisPPase_AMP PRK05457 Feature: gene Location: 46690-47214 bp Feature: domain Description: PaaY Location: 46714-47206 bp Feature: domain Description: PaaY Location: 4671 4-47206 bp Feature: gene Location: 47413-48297 bp Feature: domain Description: MhpC Location: 47440-48292 bp Feature: domain Description: MhpC Location: 47440-48292 bp Feature: gene Location: 49500-51203 bp Feature: RT Description: RVT_N Location: 49560-49803 bp Feature: RT Description: RVT_N Location: 49560-49803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49848-50496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49848-50496 bp Feature: domain Description: GIIM Note: maturase Location: 50547-50781 bp Feature: domain Description: GIIM Note: maturase Location: 50547-50781 bp Feature: domain Description: HNH Note: nucleases Location: 51033-51168 bp Feature: domain Description: HNH Note: nucleases Location: 51 033-51 1 68 bp Feature: gene Location: 51331-52164 bp Feature: domain Description: PHP_HisPPase_AMP Location: 51343-52081 bp Feature: domain Description: PHP_HisPPase_AMP Location: 51 343-52081 bp Feature: gene Location: 52378-53262 bp Feature: domain Description: PRK05457 Location: 52381-53254 bp Feature: domain Description: PRK05457 Location: 52381 -53254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PaaY (TIGR02287), MhpC (COG0596), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PHP_HisPPase_AMP (cd07438), PRK05457 (protease HtpX)

Seq: LRHY01000061.1 Janthinobacterium sp. HH100 JAB2_contig000061, whole genome shotgun sequence (270321 bp)
Overview 1 RT 1: 110362-116633 bp Neighborhood of RT #1 [110362, 116641] HMPP_kinase TMP_TenI RVT_N RVT-GII GIIM HNH CheY ANTAR alcohol_DH_class_III Feature: gene Location: 110362-111129 bp Feature: domain Description: HMPP_kinase Location: 110386-111076 bp Feature: domain Description: HMPP_kinase Location: 110386-111076 bp Feature: gene Location: 111140-111763 bp Feature: domain Description: TMP_TenI Location: 111152-111746 bp Feature: domain Description: TMP_TenI Location: 111152 -111746 bp Feature: gene Location: 112992-114695 bp Feature: RT Description: RVT_N Location: 113052-113295 bp Feature: RT Description: RVT_N Location: 113052 -1132 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113340-113988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113340-113988 bp Feature: domain Description: GIIM Note: maturase Location: 114039-114273 bp Feature: domain Description: GIIM Note: maturase Location: 114039-1142 73 bp Feature: domain Description: HNH Note: nucleases Location: 114525-114663 bp Feature: domain Description: HNH Note: nucleases Location: 11452 5-114663 bp Feature: gene Location: 114812-115444 bp Feature: domain Description: CheY Location: 114833-115184 bp Feature: domain Description: CheY Location: 114833-115184 bp Feature: domain Description: ANTAR Location: 115229-115382 bp Feature: domain Description: ANTAR Location: 1152 2 9-115382 bp Feature: gene Location: 115535-116641 bp Feature: domain Description: alcohol_DH_class_III Location: 115538-116633 bp Feature: domain Description: alcohol_DH_class_III Location: 115538-116633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HMPP_kinase (cd01169), TMP_TenI (cd00564), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), CheY (COG0784), ANTAR (smart01012), alcohol_DH_class_III (cd08300)

Seq: LRHY01000122.1 Janthinobacterium sp. HH100 JAB2_contig000122, whole genome shotgun sequence (1877 bp)
Overview 1 RT 1: 76-1243 bp Neighborhood of RT #1 [76, 1323] RVT-GII GIIM Feature: gene Location: 76-1323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-93 7 bp Feature: domain Description: GIIM Note: maturase Location: 1018-1243 bp Feature: domain Description: GIIM Note: maturase Location: 1018-1243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LRHY01000083.1 Janthinobacterium sp. HH100 JAB2_contig000083, whole genome shotgun sequence (264798 bp)
Overview 1 RT 1: 159733-166875 bp Neighborhood of RT #1 [159733, 166875] Zot PulD RVT-Retrons INT_Rci_Hp1_C Feature: gene Location: 159733-160812 bp Feature: domain Description: Zot Location: 159739-160540 bp Feature: domain Description: Zot Location: 159739-16054 0 bp Feature: gene Location: 160809-162098 bp Feature: domain Description: PulD Location: 161319-162084 bp Feature: domain Description: PulD Location: 161319-162084 bp Feature: gene Location: 163704-164708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163905-164454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 163905-164 4 54 bp Feature: gene Location: 164720-165700 bp Feature: domain Description: INT_Rci_Hp1_C Location: 165206-165665 bp Feature: domain Description: INT_Rci_Hp1_C Location: 165206-165665 bp Feature: gene Location: 166297-166875 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zot (pfam05707), PulD (COG1450), RVT-Retrons, INT_Rci_Hp1_C (cd00796)

Seq: LRHY01000145.1 Janthinobacterium sp. HH100 JAB2_contig000145, whole genome shotgun sequence (284559 bp)
Overview 1 RT 1: 168163-173700 bp 2 RT 2: 175923-179562 bp Neighborhood of RT #1 [168163, 173735] PRK10770 LptD RVT_N RVT-GII GIIM HNH Neighborhood of RT #2 [175923, 179600] RVT_N RVT-GII GIIM HNHc COG3178 NTP_transferase_like_1 Feature: gene Location: 168163-169572 bp Feature: domain Description: PRK10770 Location: 168340-169555 bp Feature: domain Description: PRK10770 Location: 168340-1695 5 5 bp Feature: gene Location: 169661-171961 bp Feature: domain Description: LptD Location: 169766-171878 bp Feature: domain Description: LptD Location: 169766-171878 bp Feature: gene Location: 172035-173735 bp Feature: RT Description: RVT_N Location: 172092-172335 bp Feature: RT Description: RVT_N Location: 172092-172335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172380-173028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172380-173028 bp Feature: domain Description: GIIM Note: maturase Location: 173079-173313 bp Feature: domain Description: GIIM Note: maturase Location: 173079-173313 bp Feature: domain Description: HNH Note: nucleases Location: 173565-173700 bp Feature: domain Description: HNH Note: nucleases Location: 1735 65 -173700 bp Feature: gene Location: 175923-177626 bp Feature: RT Description: RVT_N Location: 175983-176226 bp Feature: RT Description: RVT_N Location: 175 983-176226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176271-176919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176271-176919 bp Feature: domain Description: GIIM Note: maturase Location: 176970-177204 bp Feature: domain Description: GIIM Note: maturase Location: 176970-177204 bp Feature: domain Description: HNHc Note: nucleases Location: 177438-177588 bp Feature: domain Description: HNHc Note: nucleases Location: 177438-1775 88 bp Feature: gene Location: 177751-178818 bp Feature: domain Description: COG3178 Location: 177778-178792 bp Feature: domain Description: COG3178 Location: 177778-178792 bp Feature: gene Location: 178881-179600 bp Feature: domain Description: NTP_transferase_like_1 Location: 178887-179562 bp Feature: domain Description: NTP_transferase_like_1 Location: 178887-1795 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), HNHc (smart00507), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LRHY01000044.1 Janthinobacterium sp. HH100 JAB2_contig000044, whole genome shotgun sequence (14940 bp)
Overview 1 RT 1: 1326-6337 bp Neighborhood of RT #1 [1326, 6729] RVT-Retrons DEXQc_UvrD DEXQc_UvrD HelD AAA_15 AAA_15 TOPRIM_OLD Feature: gene Location: 1326-3065 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1461-2088 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 146 1-2088 bp Feature: gene Location: 3600-4997 bp Feature: domain Description: DEXQc_UvrD Location: 3615-3813 bp Feature: domain Description: DEXQc_UvrD Location: 36 15-3813 bp Feature: domain Description: DEXQc_UvrD Location: 3861-4059 bp Feature: domain Description: DEXQc_UvrD Location: 386 1-4059 bp Feature: domain Description: HelD Location: 4800-4980 bp Feature: domain Description: HelD Location: 4800-4980 bp Feature: gene Location: 5026-6729 bp Feature: domain Description: AAA_15 Location: 5032-5254 bp Feature: domain Description: AAA_15 Location: 5032-5254 bp Feature: domain Description: AAA_15 Location: 5635-5977 bp Feature: domain Description: AAA_15 Location: 56 35-5977 bp Feature: domain Description: TOPRIM_OLD Location: 6112-6337 bp Feature: domain Description: TOPRIM_OLD Location: 6 112-6 337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DEXQc_UvrD (cd17932), HelD (COG3973), AAA_15 (pfam13175), TOPRIM_OLD (cd01026)