myRT

myRT report for GCA_001766835.1_ASM176683v1

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Seq: LKEU01000020.1 Acetobacterium wieringae strain DSM 1911 ACWI_contig000020, whole genome shotgun sequence (77343 bp)
Overview 1 RT 1: 997-12097 bp Neighborhood of RT #1 [997, 12129] RVT-GII Intron_maturas2 YtxK COG4646 KOG1000 COG3177 Feature: gene Location: 997-1692 bp Feature: gene Location: 1793-3619 bp Ori: OFV71465.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063-2897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2063-2897 bp Feature: domain Description: Intron_maturas2 Location: 2972-3278 bp Feature: domain Description: Intron_maturas2 Location: 2972-3278 bp Feature: gene Location: 4233-11117 bp Ori: OFV71466.1 Feature: domain Description: YtxK Location: 7029-7785 bp Feature: domain Description: YtxK Location: 7029-7785 bp Feature: domain Description: COG4646 Location: 7854-10479 bp Feature: domain Description: COG4646 Location: 7854-1 0479 bp Feature: domain Description: KOG1000 Location: 10830-11037 bp Feature: domain Description: KOG1 000 Location: 1 0830-1 1 037 bp Feature: gene Location: 11344-12129 bp Ori: OFV71467.1 Feature: domain Description: COG3177 Location: 11407-12097 bp Feature: domain Description: COG31 77 Location: 1 1 407-1 2097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), COG3177 (Fic family protein )

Seq: LKEU01000044.1 Acetobacterium wieringae strain DSM 1911 ACWI_contig000044, whole genome shotgun sequence (67093 bp)
Overview 1 RT 1: 22215-29692 bp Neighborhood of RT #1 [22215, 29739] FadB PRK05809 PRK05809 RVT-GII GIIM RVT-GII RocR GcvT GcvT Feature: gene Location: 22215-23066 bp Ori: OFV69154.1 Gene: mmgB Feature: domain Description: FadB Location: 22218-23064 bp Feature: domain Description: FadB Location: 2 2 2 18-2 3064 bp Feature: gene Location: 23097-24017 bp Ori: OFV69155.1 Gene: echA8 Feature: domain Description: PRK05809 Location: 23100-23688 bp Feature: domain Description: PRK05809 Location: 2 3100-2 3688 bp Feature: domain Description: PRK05809 Location: 23769-24012 bp Feature: domain Description: PRK05809 Location: 2 3769-2 4012 bp Feature: gene Location: 24815-25549 bp Ori: OFV69156.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24824-25103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 482 4-2 5103 bp Feature: domain Description: GIIM Note: maturase Location: 25157-25379 bp Feature: domain Description: GIIM Note: maturase Location: 2 5157-2 5379 bp Feature: gene Location: 25576-26229 bp Ori: OFV69157.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25930-26218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5930-2 62 18 bp Feature: gene Location: 26700-28154 bp Ori: OFV69158.1 Gene: ntrC Feature: domain Description: RocR Location: 26778-28143 bp Feature: domain Description: RocR Location: 2 6778-2 8143 bp Feature: gene Location: 28405-29739 bp Ori: OFV69159.1 Gene: gcvT_7 Feature: domain Description: GcvT Location: 28480-29065 bp Feature: domain Description: GcvT Location: 2 8480-2 9065 bp Feature: domain Description: GcvT Location: 29248-29692 bp Feature: domain Description: GcvT Location: 2 92 48-2 9692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FadB (TIGR02437), PRK05809 (short-chain-enoyl-CoA hydratase), RVT-GII, GIIM (pfam08388), RocR (COG3829), GcvT (COG0404)

Seq: LKEU01000015.1 Acetobacterium wieringae strain DSM 1911 ACWI_contig000015, whole genome shotgun sequence (70581 bp)
Overview 1 RT 1: 62603-66663 bp Neighborhood of RT #1 [62603, 66663] DUF815 RVT-GII Feature: gene Location: 62603-62830 bp Feature: gene Location: 63066-64373 bp Ori: OFV71788.1 Feature: domain Description: DUF815 Location: 63624-64362 bp Feature: domain Description: DUF815 Location: 63 624-643 62 bp Feature: gene Location: 64888-65391 bp Ori: OFV71789.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64927-65284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64927-65284 bp Feature: gene Location: 65766-66155 bp Feature: gene Location: 66322-66663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF815 (pfam05673), RVT-GII

Seq: LKEU01000031.1 Acetobacterium wieringae strain DSM 1911 ACWI_contig000031, whole genome shotgun sequence (180404 bp)
Overview 1 RT 1: 126530-130350 bp Neighborhood of RT #1 [126530, 131627] PhnB_like ECM27 RVT-GII GIIM HTH_XRE Feature: gene Location: 126530-126958 bp Ori: OFV70407.1 Feature: domain Description: PhnB_like Location: 126539-126926 bp Feature: domain Description: PhnB_like Location: 126539-126926 bp Feature: gene Location: 127268-128221 bp Ori: OFV70408.1 Gene: yrbG Feature: domain Description: ECM27 Location: 127274-128207 bp Feature: domain Description: ECM27 Location: 127274 -128207 bp Feature: gene Location: 128326-129489 bp Ori: OFV70409.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128428-129043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1284 28-12904 3 bp Feature: domain Description: GIIM Note: maturase Location: 129097-129328 bp Feature: domain Description: GIIM Note: maturase Location: 129097-129328 bp Feature: gene Location: 129482-129721 bp Feature: gene Location: 130167-131627 bp Ori: OFV70411.1 Feature: domain Description: HTH_XRE Location: 130185-130350 bp Feature: domain Description: HTH_XRE Location: 130185-130350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhnB_like (cd06588), ECM27 (COG0530), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)

Seq: LKEU01000010.1 Acetobacterium wieringae strain DSM 1911 ACWI_contig000010, whole genome shotgun sequence (246124 bp)
Overview 1 RT 1: 14235-20339 bp Neighborhood of RT #1 [14235, 20353] RVT-UG14 RVT-UG14 guaA PRK05567 Feature: gene Location: 14235-14900 bp Feature: gene Location: 15045-15308 bp Feature: gene Location: 15395-16999 bp Ori: OFV72197.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 15746-15812 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 15 746-15 812 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 15833-16103 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 15 833-16103 bp Feature: gene Location: 17340-18887 bp Ori: OFV72198.1 Gene: guaA_1 Feature: domain Description: guaA Location: 17364-18885 bp Feature: domain Description: guaA Location: 17364-18885 bp Feature: gene Location: 18896-20353 bp Ori: OFV72199.1 Gene: guaB Feature: domain Description: PRK05567 Location: 18905-20339 bp Feature: domain Description: PRK05 5 67 Location: 18905 -20339 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14, guaA (PRK00074), PRK05567 (inosine 5'-monophosphate dehydrogenase; Reviewed)