myRT

myRT report for GCA_001768825.1_ASM176882v1

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Seq: MEMJ01000011.1 Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13 rifcsphigho2_12_sub10_scaffold_1342, whole genome shotgun sequence (5699 bp)
Overview 1 RT 1: 1493-5143 bp Neighborhood of RT #1 [1493, 5271] RVT-DGRs GIIM Zn_Tnp_IS1595 DDE_Tnp_IS1595 Feature: gene Location: 1493-1684 bp Feature: gene Location: 1868-2440 bp Feature: gene Location: 2668-3159 bp Ori: OFW93650.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2689-2773 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2689-2773 bp Feature: domain Description: GIIM Note: maturase Location: 2848-3067 bp Feature: domain Description: GIIM Note: maturase Location: 2848-3067 bp Feature: gene Location: 3435-3692 bp Feature: gene Location: 4231-5271 bp Ori: OFW93652.1 Feature: domain Description: Zn_Tnp_IS1595 Location: 4324-4462 bp Feature: domain Description: Zn_Tnp_IS1 595 Location: 4324-4462 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 4690-5143 bp Feature: domain Description: DDE_Tnp_IS1 595 Location: 4690-51 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, GIIM (pfam08388), Zn_Tnp_IS1595 (pfam12760), DDE_Tnp_IS1595 (pfam12762)

Seq: MEMJ01000036.1 Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13 rifcsphigho2_12_sub10_scaffold_252, whole genome shotgun sequence (19901 bp)
Overview 1 RT 1: 7464-11111 bp Neighborhood of RT #1 [7464, 11111] Rmd1 RVT_N RVT-GII GIIM Feature: gene Location: 7464-8246 bp Ori: OFW92631.1 Feature: domain Description: Rmd1 Location: 7467-8232 bp Feature: domain Description: Rmd1 Location: 7467-82 32 bp Feature: gene Location: 8445-8726 bp Feature: gene Location: 8785-10311 bp Ori: OFW92633.1 Feature: domain Description: RVT_N Location: 8842-9085 bp Feature: domain Description: RVT_N Location: 8842 -9085 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9130-9754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9130-9754 bp Feature: domain Description: GIIM Note: maturase Location: 9805-10039 bp Feature: domain Description: GIIM Note: maturase Location: 9805-10039 bp Feature: gene Location: 10419-10676 bp Feature: gene Location: 10827-11111 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rmd1 (COG1723), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MEMJ01000066.1 Alphaproteobacteria bacterium RIFCSPHIGHO2_12_42_13 rifcsphigho2_12_sub10_scaffold_652, whole genome shotgun sequence (8275 bp)
Overview 1 RT 1: 5330-7958 bp Neighborhood of RT #1 [5330, 8128] RVT-UG4 Feature: gene Location: 5330-6664 bp Feature: gene Location: 6728-7219 bp Feature: gene Location: 7757-8128 bp Ori: OFW91217.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7775-7958 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7775-7958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4