myRT

myRT report for GCA_001769385.1_ASM176938v1

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Seq: MEPB01000058.1 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 rifcsplowo2_12_scaffold_269, whole genome shotgun sequence (132342 bp)
Overview 1 RT 1: 15504-21240 bp Neighborhood of RT #1 [15504, 21598] PLDc_unchar6 RVT-UG7 RAYT Feature: gene Location: 15504-15791 bp Feature: gene Location: 17319-18239 bp Ori: OFY85028.1 Feature: domain Description: PLDc_unchar6 Location: 17361-17685 bp Feature: domain Description: PLDc_unchar6 Location: 1 7361 -1 7685 bp Feature: gene Location: 18580-20193 bp Ori: OFY85029.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 19003-19399 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 9003-1 9399 bp Feature: gene Location: 20190-20912 bp Feature: gene Location: 21033-21598 bp Feature: domain Description: RAYT Location: 21075-21240 bp Feature: domain Description: RAYT Location: 21 075-21 240 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLDc_unchar6 (cd09176), RVT-UG7, RAYT (COG1943)

Seq: MEPB01000063.1 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 rifcsplowo2_12_scaffold_30957, whole genome shotgun sequence (12058 bp)
Overview 1 RT 1: 5072-10976 bp Neighborhood of RT #1 [5072, 10990] 34 34 34 RVT_N RVT-GII GIIM HNH bZIP_CREB1 NlpD Feature: gene Location: 5072-5371 bp Feature: gene Location: 5377-7542 bp Ori: OFY84719.1 Feature: domain Description: 34 Location: 5746-5860 bp Feature: domain Description: 34 Location: 5746-5860 bp Feature: domain Description: 34 Location: 6094-6205 bp Feature: domain Description: 34 Location: 6094-62 05 bp Feature: domain Description: 34 Location: 6679-6925 bp Feature: domain Description: 34 Location: 6679-692 5 bp Feature: gene Location: 8262-9932 bp Feature: domain Description: RVT_N Location: 8316-8559 bp Feature: domain Description: RVT_N Location: 8316-8559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8604-9237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8604-92 37 bp Feature: domain Description: GIIM Note: maturase Location: 9294-9522 bp Feature: domain Description: GIIM Note: maturase Location: 92 94-952 2 bp Feature: domain Description: HNH Note: nucleases Location: 9759-9894 bp Feature: domain Description: HNH Note: nucleases Location: 9759-9894 bp Feature: gene Location: 10028-10330 bp Ori: OFY84723.1 Feature: domain Description: bZIP_CREB1 Location: 10145-10238 bp Feature: domain Description: bZIP_CREB1 Location: 10145-102 38 bp Feature: gene Location: 10460-10990 bp Ori: OFY84720.1 Feature: domain Description: NlpD Location: 10586-10976 bp Feature: domain Description: NlpD Location: 10586-10976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 34 (PHA02584), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), bZIP_CREB1 (cd14690), NlpD (COG0739)

Seq: MEPB01000043.1 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 rifcsplowo2_12_scaffold_2282, whole genome shotgun sequence (22894 bp)
Overview 1 RT 1: 1861-5770 bp Neighborhood of RT #1 [1861, 5838] YwqK YwqK RVT-DGRs Avd_like Y1_Tnp Feature: gene Location: 1861-2076 bp Feature: gene Location: 2112-2993 bp Ori: OFY85893.1 Feature: domain Description: YwqK Location: 2268-2685 bp Feature: domain Description: YwqK Location: 2268-2685 bp Feature: domain Description: YwqK Location: 2817-2964 bp Feature: domain Description: YwqK Location: 2817-2964 bp Feature: gene Location: 3145-4494 bp Ori: OFY85894.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3322-4051 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 3 22-4051 bp Feature: gene Location: 4887-5330 bp Ori: OFY85895.1 Feature: domain Description: Avd_like Location: 4974-5289 bp Feature: domain Description: Avd_like Location: 4974-5289 bp Feature: gene Location: 5419-5838 bp Ori: OFY85896.1 Feature: domain Description: Y1_Tnp Location: 5434-5770 bp Feature: domain Description: Y1_Tnp Location: 543 4-5770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YwqK (COG2849), RVT-DGRs, Avd_like (cd16376), Y1_Tnp (pfam01797)

Seq: MEPB01000095.1 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 rifcsplowo2_12_scaffold_73502, whole genome shotgun sequence (6193 bp)
Overview 1 RT 1: 240-5356 bp Neighborhood of RT #1 [240, 5356] Avd_like 23S_rRNA_IVP_like RVT-DGRs TlpA_like_family Feature: gene Location: 240-581 bp Ori: OFY82966.1 Feature: domain Description: Avd_like Location: 267-573 bp Feature: domain Description: Avd_like Location: 267-573 bp Feature: gene Location: 664-1008 bp Ori: OFY82967.1 Feature: domain Description: 23S_rRNA_IVP_like Location: 697-1006 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 697-1006 bp Feature: gene Location: 1838-2992 bp Ori: OFY82971.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1844-2609 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 184 4 -2609 bp Feature: gene Location: 3034-4539 bp Ori: OFY82968.1 Feature: domain Description: TlpA_like_family Location: 4165-4486 bp Feature: domain Description: TlpA_like_family Location: 4 165-4 4 86 bp Feature: gene Location: 5057-5356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), 23S_rRNA_IVP_like (cd16377), RVT-DGRs, TlpA_like_family (cd02966)

Seq: MEPB01000006.1 Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 rifcsplowo2_12_scaffold_109, whole genome shotgun sequence (103798 bp)
Overview 1 RT 1: 49209-52370 bp Neighborhood of RT #1 [49209, 52370] HNH_3 RVT-DGRs Feature: gene Location: 49209-50033 bp Ori: OFY87867.1 Feature: domain Description: HNH_3 Location: 49743-49857 bp Feature: domain Description: HNH_3 Location: 49743-4985 7 bp Feature: gene Location: 50035-50340 bp Feature: gene Location: 50327-51286 bp Ori: OFY87904.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50537-51125 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 05 37-5 1125 bp Feature: gene Location: 51503-51877 bp Feature: gene Location: 51885-52370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH_3 (pfam13392), RVT-DGRs