myRT

myRT report for GCA_001770995.1_ASM177099v1

Download annotations/find similar RTs

Seq: MESO01000004.1 Burkholderiales bacterium RIFOXYC12_FULL_65_23 rifoxyc3_full_scaffold_110, whole genome shotgun sequence (86723 bp)
Overview 1 RT 1: 70000-82704 bp Neighborhood of RT #1 [70000, 82715] PRK09791 gram_neg_porins RVT-GII GIIM PRK00566 rpoB Feature: gene Location: 70000-70902 bp Ori: OGB72898.1 Feature: domain Description: PRK09791 Location: 70003-70861 bp Feature: domain Description: PRK09791 Location: 70003-70861 bp Feature: gene Location: 70933-72096 bp Ori: OGB72899.1 Feature: domain Description: gram_neg_porins Location: 71074-72094 bp Feature: domain Description: gram_neg_porins Location: 71 074-72094 bp Feature: gene Location: 72423-73808 bp Ori: OGB72900.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72774-73386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72774-73386 bp Feature: domain Description: GIIM Note: maturase Location: 73446-73650 bp Feature: domain Description: GIIM Note: maturase Location: 73446-73650 bp Feature: gene Location: 74303-78511 bp Ori: OGB72901.1 Feature: domain Description: PRK00566 Location: 74345-78452 bp Feature: domain Description: PRK00566 Location: 74345-78452 bp Feature: gene Location: 78591-82715 bp Ori: OGB72902.1 Feature: domain Description: rpoB Location: 78630-82704 bp Feature: domain Description: rpoB Location: 78630-82704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09791 (LysR family transcriptional regulator), gram_neg_porins (cd00342), RVT-GII, GIIM (pfam08388), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), rpoB (TIGR02013)

Seq: MESO01000008.1 Burkholderiales bacterium RIFOXYC12_FULL_65_23 rifoxyc3_full_scaffold_1225, whole genome shotgun sequence (10787 bp)
Overview 1 RT 1: 486-8400 bp Neighborhood of RT #1 [486, 8693] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III cas_NE0113 PP2C_2 Feature: gene Location: 486-737 bp Feature: gene Location: 2062-2343 bp Ori: OGB72676.1 Feature: domain Description: Cas2_I_II_III Location: 2077-2305 bp Feature: domain Description: Cas2 _I_II_III Location: 2 077-2 305 bp Feature: gene Location: 2353-4599 bp Ori: OGB72677.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2713-3322 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 713-332 2 bp Feature: domain Description: Cas1_I-II-III Location: 3604-4561 bp Feature: domain Description: Cas1_I-II-III Location: 3604-4561 bp Feature: gene Location: 6257-7444 bp Ori: OGB72678.1 Feature: domain Description: cas_NE0113 Location: 6260-6899 bp Feature: domain Description: cas_NE0113 Location: 62 60-6899 bp Feature: gene Location: 7539-8693 bp Ori: OGB72679.1 Feature: domain Description: PP2C_2 Location: 7731-8400 bp Feature: domain Description: PP2 C_2 Location: 7731-8400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), cas_NE0113 (TIGR02584), PP2C_2 (pfam13672)