myRT

myRT report for GCA_001782795.1_ASM178279v1

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Seq: MFPQ01000138.1 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12 rifcsplowo2_02_scaffold_806, whole genome shotgun sequence (126807 bp)
Overview 1 RT 1: 4694-7131 bp 2 RT 2: 84762-94578 bp Neighborhood of RT #1 [4694, 7169] PIN_VapC-like RVT-GII GIIM TolA_bind_tri TolA_bind_tri DUF2442 Neighborhood of RT #2 [84762, 94736] Plancto_Ver_chp RVT-DGRs FlgD_ig PUA PUA Peptidase_S74 Feature: gene Location: 4694-5155 bp Ori: OGH56046.1 Feature: domain Description: PIN_VapC-like Location: 4748-5093 bp Feature: domain Description: PIN_VapC-like Location: 4748-5093 bp Feature: gene Location: 5143-5448 bp Feature: gene Location: 5536-6180 bp Ori: OGH56048.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5539-5806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5539-5806 bp Feature: domain Description: GIIM Note: maturase Location: 5878-6082 bp Feature: domain Description: GIIM Note: maturase Location: 5878-6082 bp Feature: gene Location: 6337-6618 bp Ori: OGH56049.1 Feature: domain Description: TolA_bind_tri Location: 6394-6466 bp Feature: domain Description: TolA_bind_tri Location: 6394-6466 bp Feature: domain Description: TolA_bind_tri Location: 6472-6556 bp Feature: domain Description: TolA_bind_tri Location: 6472-6556 bp Feature: gene Location: 6897-7169 bp Ori: OGH56050.1 Feature: domain Description: DUF2442 Location: 6930-7131 bp Feature: domain Description: DUF2442 Location: 6930-71 31 bp Feature: gene Location: 84762-85181 bp Ori: OGH56115.1 Feature: domain Description: Plancto_Ver_chp Location: 84840-85131 bp Feature: domain Description: Plancto_Ver_chp Location: 84840-851 31 bp Feature: gene Location: 85330-85515 bp Feature: gene Location: 85484-87028 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85580-86000 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85580-86000 bp Feature: gene Location: 87219-89126 bp Ori: OGH56117.1 Feature: domain Description: FlgD_ig Location: 88902-89067 bp Feature: domain Description: FlgD_ig Location: 88902-89067 bp Feature: gene Location: 89295-94736 bp Feature: domain Description: PUA Location: 92001-92109 bp Feature: domain Description: PUA Location: 92001 -921 09 bp Feature: domain Description: PUA Location: 92817-92901 bp Feature: domain Description: PUA Location: 9281 7-92901 bp Feature: domain Description: Peptidase_S74 Location: 94410-94578 bp Feature: domain Description: Peptidase_S74 Location: 9441 0-94578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), RVT-GII, GIIM (pfam08388), TolA_bind_tri (pfam16331), DUF2442 (pfam10387), Plancto_Ver_chp (TIGR04138), RVT-DGRs, FlgD_ig (pfam13860), PUA (smart00359), Peptidase_S74 (pfam13884)

Seq: MFPQ01000071.1 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12 rifcsplowo2_02_scaffold_3221, whole genome shotgun sequence (173160 bp)
Overview 1 RT 1: 95970-102754 bp Neighborhood of RT #1 [95970, 102948] MTAN RVT-CRISPR-like SunT type_I_hlyD RND_mfp Feature: gene Location: 95970-97007 bp Feature: gene Location: 97065-97893 bp Feature: domain Description: MTAN Location: 97158-97653 bp Feature: domain Description: MTAN Location: 97158-97653 bp Feature: gene Location: 98295-99761 bp Ori: OGH61567.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 98877-99504 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 98877-99504 bp Feature: gene Location: 99940-102159 bp Feature: domain Description: SunT Location: 100660-101935 bp Feature: domain Description: SunT Location: 100660-101935 bp Feature: gene Location: 102166-102948 bp Ori: OGH61568.1 Feature: domain Description: type_I_hlyD Location: 102196-102451 bp Feature: domain Description: type_I_hlyD Location: 102 196-102 451 bp Feature: domain Description: RND_mfp Location: 102499-102754 bp Feature: domain Description: RND_mfp Location: 102 499-102 754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MTAN (cd09008), RVT-CRISPR, SunT (COG2274), type_I_hlyD (TIGR01843), RND_mfp (TIGR01730)

Seq: MFPQ01000080.1 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12 rifcsplowo2_02_scaffold_3569, whole genome shotgun sequence (19024 bp)
Overview 1 RT 1: 6157-12164 bp Neighborhood of RT #1 [6157, 12164] gag-asp_proteas RVT-GII GAF_2 GAF_2 GGDEF Feature: gene Location: 6157-6498 bp Ori: OGH58557.1 Feature: domain Description: gag-asp_proteas Location: 6193-6427 bp Feature: domain Description: gag-asp_proteas Location: 6193 -6427 bp Feature: gene Location: 6551-6745 bp Feature: gene Location: 7297-8634 bp Ori: OGH58569.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7579-8266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7579-8266 bp Feature: gene Location: 9248-11398 bp Ori: OGH58559.1 Feature: domain Description: GAF_2 Location: 9581-9926 bp Feature: domain Description: GAF_2 Location: 9581-9926 bp Feature: domain Description: GAF_2 Location: 10028-10451 bp Feature: domain Description: GAF_2 Location: 10028-10451 bp Feature: domain Description: GGDEF Location: 10958-11354 bp Feature: domain Description: GGDEF Location: 10958-113 54 bp Feature: gene Location: 11451-12164 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gag-asp_proteas (pfam13975), RVT-GII, GAF_2 (pfam13185), GGDEF (TIGR00254)