myRT

myRT report for GCA_001784175.1_ASM178417v1

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Seq: MFPR01000004.1 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_12, whole genome shotgun sequence (507730 bp)
Overview 1 RT 1: 139592-149796 bp 2 RT 2: 228016-230429 bp Neighborhood of RT #1 [139592, 149846] PUA PUA Peptidase_S74 BID_1 FlgD_ig RVT-DGRs HEAT_2 Plancto_Ver_chp Neighborhood of RT #2 [228016, 230491] DUF2442 TolA_bind_tri TolA_bind_tri RVT-GII GIIM PIN_VapC-like Feature: gene Location: 139592-145099 bp Ori: OGH62467.1 Feature: domain Description: PUA Location: 142298-142406 bp Feature: domain Description: PUA Location: 1 42298-1 42406 bp Feature: domain Description: PUA Location: 143156-143264 bp Feature: domain Description: PUA Location: 1 431 56-1 43264 bp Feature: domain Description: Peptidase_S74 Location: 144773-144941 bp Feature: domain Description: Peptidase_S74 Location: 1 44773-1 44941 bp Feature: gene Location: 145268-147286 bp Ori: OGH62468.1 Feature: domain Description: BID_1 Location: 145571-145778 bp Feature: domain Description: BID_1 Location: 1 45571 -1 45778 bp Feature: domain Description: FlgD_ig Location: 147062-147227 bp Feature: domain Description: FlgD_ig Location: 1 47062-1 47227 bp Feature: gene Location: 147559-149124 bp Ori: OGH62469.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 147655-148075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 47655-1 48075 bp Feature: domain Description: HEAT_2 Location: 148651-148837 bp Feature: domain Description: HEAT_2 Location: 1 48651 -1 48837 bp Feature: gene Location: 149074-149421 bp Feature: gene Location: 149427-149846 bp Ori: OGH62471.1 Feature: domain Description: Plancto_Ver_chp Location: 149505-149796 bp Feature: domain Description: Plancto_Ver_chp Location: 1 49505-1 49796 bp Feature: gene Location: 228016-228288 bp Ori: OGH62541.1 Feature: domain Description: DUF2442 Location: 228049-228250 bp Feature: domain Description: DUF2442 Location: 228049-228250 bp Feature: gene Location: 228567-228848 bp Ori: OGH62542.1 Feature: domain Description: TolA_bind_tri Location: 228624-228696 bp Feature: domain Description: TolA_bind_tri Location: 228624-228696 bp Feature: domain Description: TolA_bind_tri Location: 228702-228786 bp Feature: domain Description: TolA_bind_tri Location: 228702-228786 bp Feature: gene Location: 229005-229649 bp Ori: OGH62543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229008-229275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229008-229275 bp Feature: domain Description: GIIM Note: maturase Location: 229347-229551 bp Feature: domain Description: GIIM Note: maturase Location: 229347-229551 bp Feature: gene Location: 229737-230042 bp Feature: gene Location: 230030-230491 bp Ori: OGH62545.1 Feature: domain Description: PIN_VapC-like Location: 230084-230429 bp Feature: domain Description: PIN_VapC-like Location: 230084-230429 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PUA (smart00359), Peptidase_S74 (pfam13884), BID_1 (smart00634), FlgD_ig (pfam13860), RVT-DGRs, HEAT_2 (pfam13646), Plancto_Ver_chp (TIGR04138), DUF2442 (pfam10387), TolA_bind_tri (pfam16331), RVT-GII
GIIM (pfam08388), PIN_VapC-like (cd18715)

Seq: MFPR01000020.1 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_26, whole genome shotgun sequence (279247 bp)
Overview 1 RT 1: 180448-187278 bp Neighborhood of RT #1 [180448, 187472] MTAN RVT-CRISPR-like SunT type_I_hlyD RND_mfp Feature: gene Location: 180448-181485 bp Feature: gene Location: 181543-182371 bp Feature: domain Description: MTAN Location: 181636-182131 bp Feature: domain Description: MTAN Location: 181636-182 131 bp Feature: gene Location: 182773-184239 bp Ori: OGH60357.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 183355-183982 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 183355-183982 bp Feature: gene Location: 184281-186683 bp Ori: OGH60358.1 Feature: domain Description: SunT Location: 185001-186591 bp Feature: domain Description: SunT Location: 185001-186591 bp Feature: gene Location: 186690-187472 bp Ori: OGH60359.1 Feature: domain Description: type_I_hlyD Location: 186720-186975 bp Feature: domain Description: type_I_hlyD Location: 18672 0-186975 bp Feature: domain Description: RND_mfp Location: 187023-187278 bp Feature: domain Description: RND_mfp Location: 18702 3-1872 78 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MTAN (cd09008), RVT-CRISPR, SunT (COG2274), type_I_hlyD (TIGR01843), RND_mfp (TIGR01730)

Seq: MFPR01000010.1 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 rifcsplowo2_12_scaffold_1512, whole genome shotgun sequence (31112 bp)
Overview 1 RT 1: 18081-24088 bp Neighborhood of RT #1 [18081, 24088] gag-asp_proteas RVT-GII GAF_2 GAF_2 GGDEF Feature: gene Location: 18081-18422 bp Ori: OGH61093.1 Feature: domain Description: gag-asp_proteas Location: 18117-18351 bp Feature: domain Description: gag-asp_proteas Location: 18117-183 51 bp Feature: gene Location: 18475-18669 bp Feature: gene Location: 19221-20558 bp Ori: OGH61107.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19503-20190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19503 -20190 bp Feature: gene Location: 21172-23322 bp Ori: OGH61095.1 Feature: domain Description: GAF_2 Location: 21505-21850 bp Feature: domain Description: GAF_2 Location: 21505-21850 bp Feature: domain Description: GAF_2 Location: 21952-22375 bp Feature: domain Description: GAF_2 Location: 21952-223 75 bp Feature: domain Description: GGDEF Location: 22882-23278 bp Feature: domain Description: GGDEF Location: 22882-23 278 bp Feature: gene Location: 23375-24088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gag-asp_proteas (pfam13975), RVT-GII, GAF_2 (pfam13185), GGDEF (TIGR00254)