myRT

myRT report for GCA_001787835.1_ASM178783v1

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Seq: MFYW01000027.1 Candidatus Raymondbacteria bacterium RIFOXYC2_FULL_50_21 rifoxyc2_full_scaffold_241, whole genome shotgun sequence (109393 bp)
Overview 1 RT 1: 54548-62432 bp Neighborhood of RT #1 [54548, 62482] sensory_box CHD STKc_PknB_like STKc_PknB_like FGE-sulfatase Avd_like RVT-DGRs YhcG YhcG_C Feature: gene Location: 54548-58861 bp Ori: OGJ97374.1 Feature: domain Description: sensory_box Location: 54710-55016 bp Feature: domain Description: sensory_box Location: 5471 0-5501 6 bp Feature: domain Description: CHD Location: 55103-55652 bp Feature: domain Description: CHD Location: 551 03-55652 bp Feature: domain Description: STKc_PknB_like Location: 55745-56027 bp Feature: domain Description: STKc_PknB_like Location: 55745-56027 bp Feature: domain Description: STKc_PknB_like Location: 56150-56660 bp Feature: domain Description: STKc_PknB_like Location: 561 50-56660 bp Feature: domain Description: FGE-sulfatase Location: 58124-58847 bp Feature: domain Description: FGE-sulfatase Location: 581 24-58847 bp Feature: gene Location: 58935-59276 bp Ori: OGJ97375.1 Feature: domain Description: Avd_like Location: 58956-59268 bp Feature: domain Description: Avd_like Location: 58956-59268 bp Feature: gene Location: 59273-60538 bp Ori: OGJ97376.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59480-60128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59480-601 28 bp Feature: gene Location: 60893-61198 bp Feature: gene Location: 61322-62482 bp Ori: OGJ97378.1 Feature: domain Description: YhcG Location: 61391-61643 bp Feature: domain Description: YhcG Location: 61 391 -61 643 bp Feature: domain Description: YhcG_C Location: 61973-62432 bp Feature: domain Description: YhcG_C Location: 61 973-62432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), CHD (cd07302), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, YhcG (COG4804), YhcG_C

Seq: MFYW01000026.1 Candidatus Raymondbacteria bacterium RIFOXYC2_FULL_50_21 rifoxyc2_full_scaffold_232, whole genome shotgun sequence (58538 bp)
Overview 1 RT 1: 1-4681 bp Neighborhood of RT #1 [1, 4776] Rhs_assc_core RVT-GII GIIM PIN_VapC-like Feature: gene Location: 1-804 bp Feature: domain Description: Rhs_assc_core Location: 58-211 bp Feature: domain Description: Rhs_assc_core Location: 58-2 11 bp Feature: gene Location: 806-1600 bp Feature: gene Location: 2154-3464 bp Ori: OGJ97437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2457-3081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 457-3081 bp Feature: domain Description: GIIM Note: maturase Location: 3153-3363 bp Feature: domain Description: GIIM Note: maturase Location: 3153-3363 bp Feature: gene Location: 4097-4276 bp Feature: gene Location: 4279-4776 bp Ori: OGJ97439.1 Feature: domain Description: PIN_VapC-like Location: 4294-4681 bp Feature: domain Description: PIN_VapC-like Location: 42 94-4681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715)

Seq: MFYW01000012.1 Candidatus Raymondbacteria bacterium RIFOXYC2_FULL_50_21 rifoxyc2_full_scaffold_1562, whole genome shotgun sequence (11807 bp)
Overview 1 RT 1: 3180-7633 bp Neighborhood of RT #1 [3180, 7668] CopG_antitoxin RVT-GII RVT-GII GIIM BrnT_toxin Feature: gene Location: 3180-3506 bp Ori: OGJ98701.1 Feature: domain Description: CopG_antitoxin Location: 3198-3432 bp Feature: domain Description: CopG_antitoxin Location: 3 198-3 43 2 bp Feature: gene Location: 3837-4019 bp Feature: gene Location: 4686-5934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4890-5271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4890-5271 bp Feature: gene Location: 5945-6703 bp Ori: OGJ98703.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6014-6158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6014-6158 bp Feature: domain Description: GIIM Note: maturase Location: 6218-6449 bp Feature: domain Description: GIIM Note: maturase Location: 6218-6449 bp Feature: gene Location: 6776-7081 bp Feature: gene Location: 7369-7668 bp Ori: OGJ98705.1 Feature: domain Description: BrnT_toxin Location: 7393-7633 bp Feature: domain Description: BrnT_toxin Location: 73 93 -763 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CopG_antitoxin (pfam12441), RVT-GII, GIIM (pfam08388), BrnT_toxin (pfam04365)

Seq: MFYW01000060.1 Candidatus Raymondbacteria bacterium RIFOXYC2_FULL_50_21 rifoxyc2_full_scaffold_95, whole genome shotgun sequence (83764 bp)
Overview 1 RT 1: 994-5046 bp Neighborhood of RT #1 [994, 5177] COG4447 COG4447 RVT-GII GIIM PIN_VapC-like AcrR Feature: gene Location: 994-2016 bp Ori: OGJ95017.1 Feature: domain Description: COG4447 Location: 1171-1501 bp Feature: domain Description: COG4 4 4 7 Location: 1171-1501 bp Feature: domain Description: COG4447 Location: 1807-2002 bp Feature: domain Description: COG4 4 4 7 Location: 1807-2002 bp Feature: gene Location: 2233-2622 bp Feature: gene Location: 2760-3419 bp Ori: OGJ95019.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2766-2871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2766-2871 bp Feature: domain Description: GIIM Note: maturase Location: 2949-3159 bp Feature: domain Description: GIIM Note: maturase Location: 294 9-3159 bp Feature: gene Location: 3813-4283 bp Ori: OGJ95020.1 Feature: domain Description: PIN_VapC-like Location: 3861-4209 bp Feature: domain Description: PIN_VapC-like Location: 3861-4 209 bp Feature: gene Location: 4491-5177 bp Ori: OGJ95021.1 Feature: domain Description: AcrR Location: 4563-5046 bp Feature: domain Description: AcrR Location: 4 563-504 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715), AcrR (COG1309)