myRT

myRT report for GCA_001789195.1_ASM178919v1

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Seq: MFYS01000001.1 Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37 rifixya3_full_scaffold_100, whole genome shotgun sequence (78623 bp)
Overview 1 RT 1: 138-8153 bp Neighborhood of RT #1 [138, 8179] GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like CarboxypepD_reg CarboxypepD_reg RVT_N RVT-GII GIIM NotI Dcm Feature: gene Location: 138-2138 bp Ori: OGJ92280.1 Feature: domain Description: GH43_62_32_68_117_130-like Location: 756-849 bp Feature: domain Description: GH43_62_32_68_1 1 7_1 30-like Location: 756-849 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1227-1308 bp Feature: domain Description: GH43_62_32_68_1 1 7_1 30-like Location: 1 227-1 308 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1584-1686 bp Feature: domain Description: GH43_62_32_68_1 1 7_1 30-like Location: 1 584-1 686 bp Feature: gene Location: 2338-3747 bp Ori: OGJ92281.1 Feature: domain Description: CarboxypepD_reg Location: 2419-2611 bp Feature: domain Description: CarboxypepD_reg Location: 241 9-261 1 bp Feature: domain Description: CarboxypepD_reg Location: 2746-2929 bp Feature: domain Description: CarboxypepD_reg Location: 2746-2929 bp Feature: gene Location: 3923-5431 bp Ori: OGJ92282.1 Feature: domain Description: RVT_N Location: 3974-4214 bp Feature: domain Description: RVT_N Location: 3974-421 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4262-4883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4262-4883 bp Feature: domain Description: GIIM Note: maturase Location: 4958-5171 bp Feature: domain Description: GIIM Note: maturase Location: 4958-51 71 bp Feature: gene Location: 6241-6873 bp Ori: OGJ92283.1 Feature: domain Description: NotI Location: 6253-6748 bp Feature: domain Description: NotI Location: 6253-6748 bp Feature: gene Location: 7049-8179 bp Ori: OGJ92284.1 Feature: domain Description: Dcm Location: 7052-8153 bp Feature: domain Description: Dcm Location: 7052-81 53 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH43_62_32_68_117_130-like (cd08994), CarboxypepD_reg (pfam13620), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NotI (pfam12183), Dcm (COG0270)

Seq: MFYS01000038.1 Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37 rifixya3_full_scaffold_2801, whole genome shotgun sequence (12001 bp)
Overview 1 RT 1: 3127-7580 bp Neighborhood of RT #1 [3127, 7615] CopG_antitoxin RVT-GII RVT-GII GIIM BrnT_toxin Feature: gene Location: 3127-3453 bp Ori: OGJ88898.1 Feature: domain Description: CopG_antitoxin Location: 3145-3379 bp Feature: domain Description: CopG_antitoxin Location: 3145-3379 bp Feature: gene Location: 3784-3966 bp Feature: gene Location: 4633-5881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4837-5218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4837-52 18 bp Feature: gene Location: 5892-6650 bp Ori: OGJ88900.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5961-6105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5961-6105 bp Feature: domain Description: GIIM Note: maturase Location: 6165-6396 bp Feature: domain Description: GIIM Note: maturase Location: 6165-6396 bp Feature: gene Location: 6723-7028 bp Feature: gene Location: 7316-7615 bp Ori: OGJ88902.1 Feature: domain Description: BrnT_toxin Location: 7340-7580 bp Feature: domain Description: BrnT_toxin Location: 7340-7580 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CopG_antitoxin (pfam12441), RVT-GII, GIIM (pfam08388), BrnT_toxin (pfam04365)

Seq: MFYS01000048.1 Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37 rifixya3_full_scaffold_3645, whole genome shotgun sequence (9685 bp)
Overview 1 RT 1: 1606-9490 bp Neighborhood of RT #1 [1606, 9540] sensory_box CHD STKc_PknB_like STKc_PknB_like FGE-sulfatase Avd_like RVT-DGRs YhcG YhcG_C Feature: gene Location: 1606-5919 bp Ori: OGJ87934.1 Feature: domain Description: sensory_box Location: 1768-2074 bp Feature: domain Description: sensory_box Location: 1768-2074 bp Feature: domain Description: CHD Location: 2161-2710 bp Feature: domain Description: CHD Location: 2161-2710 bp Feature: domain Description: STKc_PknB_like Location: 2803-3085 bp Feature: domain Description: STKc_PknB_like Location: 2803 -3 085 bp Feature: domain Description: STKc_PknB_like Location: 3208-3718 bp Feature: domain Description: STKc_PknB_like Location: 3 208-3 718 bp Feature: domain Description: FGE-sulfatase Location: 5182-5905 bp Feature: domain Description: FGE-sulfatase Location: 5182-5905 bp Feature: gene Location: 5993-6334 bp Ori: OGJ87935.1 Feature: domain Description: Avd_like Location: 6014-6326 bp Feature: domain Description: Avd_like Location: 6014-63 26 bp Feature: gene Location: 6331-7596 bp Ori: OGJ87936.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6538-7186 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 653 8-7186 bp Feature: gene Location: 7951-8256 bp Feature: gene Location: 8380-9540 bp Ori: OGJ87938.1 Feature: domain Description: YhcG Location: 8449-8701 bp Feature: domain Description: YhcG Location: 8449-8701 bp Feature: domain Description: YhcG_C Location: 9031-9490 bp Feature: domain Description: YhcG_C Location: 903 1-9490 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), CHD (cd07302), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, YhcG (COG4804), YhcG_C

Seq: MFYS01000082.1 Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37 rifixya3_full_scaffold_94, whole genome shotgun sequence (83985 bp)
Overview 1 RT 1: 987-5039 bp Neighborhood of RT #1 [987, 5170] COG4447 COG4447 RVT-GII GIIM PIN_VapC-like AcrR Feature: gene Location: 987-2009 bp Ori: OGJ84488.1 Feature: domain Description: COG4447 Location: 1164-1494 bp Feature: domain Description: COG4 4 4 7 Location: 1164 -14 94 bp Feature: domain Description: COG4447 Location: 1800-1995 bp Feature: domain Description: COG4 4 4 7 Location: 1800-1995 bp Feature: gene Location: 2226-2615 bp Feature: gene Location: 2753-3412 bp Ori: OGJ84490.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2759-2864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2759-2864 bp Feature: domain Description: GIIM Note: maturase Location: 2942-3152 bp Feature: domain Description: GIIM Note: maturase Location: 294 2-3152 bp Feature: gene Location: 3806-4276 bp Ori: OGJ84491.1 Feature: domain Description: PIN_VapC-like Location: 3854-4202 bp Feature: domain Description: PIN_VapC-like Location: 3854 -4 202 bp Feature: gene Location: 4484-5170 bp Ori: OGJ84492.1 Feature: domain Description: AcrR Location: 4556-5039 bp Feature: domain Description: AcrR Location: 4 556-5039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715), AcrR (COG1309)