myRT

myRT report for GCA_001789205.1_ASM178920v1

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Seq: MFYT01000107.1 Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 rifoxya2_full_scaffold_90, whole genome shotgun sequence (83706 bp)
Overview 1 RT 1: 954-5006 bp Neighborhood of RT #1 [954, 5137] COG4447 COG4447 RVT-GII GIIM PIN_VapC-like AcrR Feature: gene Location: 954-1976 bp Ori: OGJ85514.1 Feature: domain Description: COG4447 Location: 1131-1461 bp Feature: domain Description: COG4447 Location: 1 1 31 -1 461 bp Feature: domain Description: COG4447 Location: 1767-1962 bp Feature: domain Description: COG4447 Location: 1 767-1 962 bp Feature: gene Location: 2193-2582 bp Feature: gene Location: 2720-3379 bp Ori: OGJ85516.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726-2831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726-2831 bp Feature: domain Description: GIIM Note: maturase Location: 2909-3119 bp Feature: domain Description: GIIM Note: maturase Location: 2909-31 1 9 bp Feature: gene Location: 3773-4243 bp Ori: OGJ85517.1 Feature: domain Description: PIN_VapC-like Location: 3821-4169 bp Feature: domain Description: PIN_VapC-like Location: 3821 -41 69 bp Feature: gene Location: 4451-5137 bp Ori: OGJ85518.1 Feature: domain Description: AcrR Location: 4523-5006 bp Feature: domain Description: AcrR Location: 4523-5006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715), AcrR (COG1309)

Seq: MFYT01000040.1 Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 rifoxya2_full_scaffold_209, whole genome shotgun sequence (58528 bp)
Overview 1 RT 1: 1-4675 bp Neighborhood of RT #1 [1, 4770] Rhs_assc_core RVT-GII GIIM PIN_VapC-like Feature: gene Location: 1-798 bp Feature: domain Description: Rhs_assc_core Location: 55-205 bp Feature: domain Description: Rhs_assc_core Location: 55-2 05 bp Feature: gene Location: 800-1594 bp Feature: gene Location: 2148-3458 bp Ori: OGJ91000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2451-3075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 451-3075 bp Feature: domain Description: GIIM Note: maturase Location: 3147-3357 bp Feature: domain Description: GIIM Note: maturase Location: 3147-3357 bp Feature: gene Location: 4091-4270 bp Feature: gene Location: 4273-4770 bp Ori: OGJ91002.1 Feature: domain Description: PIN_VapC-like Location: 4288-4675 bp Feature: domain Description: PIN_VapC-like Location: 42 88-4675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715)

Seq: MFYT01000042.1 Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 rifoxya2_full_scaffold_212, whole genome shotgun sequence (63012 bp)
Overview 1 RT 1: 54531-62415 bp Neighborhood of RT #1 [54531, 62465] sensory_box CHD STKc_PknB_like STKc_PknB_like FGE-sulfatase Avd_like RVT-DGRs YhcG YhcG_C Feature: gene Location: 54531-58844 bp Ori: OGJ90807.1 Feature: domain Description: sensory_box Location: 54693-54999 bp Feature: domain Description: sensory_box Location: 54693 -54999 bp Feature: domain Description: CHD Location: 55086-55635 bp Feature: domain Description: CHD Location: 55086-5563 5 bp Feature: domain Description: STKc_PknB_like Location: 55728-56010 bp Feature: domain Description: STKc_PknB_like Location: 55728-56010 bp Feature: domain Description: STKc_PknB_like Location: 56133-56643 bp Feature: domain Description: STKc_PknB_like Location: 5613 3 -56643 bp Feature: domain Description: FGE-sulfatase Location: 58107-58830 bp Feature: domain Description: FGE-sulfatase Location: 58107-5883 0 bp Feature: gene Location: 58918-59259 bp Ori: OGJ90808.1 Feature: domain Description: Avd_like Location: 58939-59251 bp Feature: domain Description: Avd_like Location: 5893 9-59251 bp Feature: gene Location: 59256-60521 bp Ori: OGJ90809.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59463-60111 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59463 -60111 bp Feature: gene Location: 60876-61181 bp Feature: gene Location: 61305-62465 bp Ori: OGJ90811.1 Feature: domain Description: YhcG Location: 61374-61626 bp Feature: domain Description: YhcG Location: 613 74-61626 bp Feature: domain Description: YhcG_C Location: 61956-62415 bp Feature: domain Description: YhcG_C Location: 61956-62415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), CHD (cd07302), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, YhcG (COG4804), YhcG_C

Seq: MFYT01000034.1 Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 rifoxya2_full_scaffold_1947, whole genome shotgun sequence (11687 bp)
Overview 1 RT 1: 3062-7515 bp Neighborhood of RT #1 [3062, 7550] CopG_antitoxin RVT-GII RVT-GII GIIM BrnT_toxin Feature: gene Location: 3062-3388 bp Ori: OGJ91690.1 Feature: domain Description: CopG_antitoxin Location: 3080-3314 bp Feature: domain Description: CopG_antitoxin Location: 3080-3314 bp Feature: gene Location: 3719-3901 bp Feature: gene Location: 4568-5816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4772-5153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 772-5153 bp Feature: gene Location: 5827-6585 bp Ori: OGJ91692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5896-6040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5896-604 0 bp Feature: domain Description: GIIM Note: maturase Location: 6100-6331 bp Feature: domain Description: GIIM Note: maturase Location: 6100-6331 bp Feature: gene Location: 6658-6963 bp Feature: gene Location: 7251-7550 bp Ori: OGJ91694.1 Feature: domain Description: BrnT_toxin Location: 7275-7515 bp Feature: domain Description: BrnT_toxin Location: 7275-7515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CopG_antitoxin (pfam12441), RVT-GII, GIIM (pfam08388), BrnT_toxin (pfam04365)

Seq: MFYT01000001.1 Candidatus Raymondbacteria bacterium RIFOXYA2_FULL_49_16 rifoxya2_full_scaffold_101, whole genome shotgun sequence (78486 bp)
Overview 1 RT 1: 1-8012 bp Neighborhood of RT #1 [1, 8038] GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like CarboxypepD_reg CarboxypepD_reg RVT_N RVT-GII GIIM NotI Dcm Feature: gene Location: 1-1997 bp Ori: OGJ94521.1 Feature: domain Description: GH43_62_32_68_117_130-like Location: 619-712 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 619-712 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1090-1171 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1090-1171 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1447-1549 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1447-15 49 bp Feature: gene Location: 2197-3606 bp Ori: OGJ94522.1 Feature: domain Description: CarboxypepD_reg Location: 2278-2470 bp Feature: domain Description: CarboxypepD_reg Location: 2278-2470 bp Feature: domain Description: CarboxypepD_reg Location: 2605-2788 bp Feature: domain Description: CarboxypepD_reg Location: 2605 -2788 bp Feature: gene Location: 3782-5290 bp Ori: OGJ94523.1 Feature: domain Description: RVT_N Location: 3833-4073 bp Feature: domain Description: RVT_N Location: 3833-4073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4121-4742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4121-4742 bp Feature: domain Description: GIIM Note: maturase Location: 4817-5030 bp Feature: domain Description: GIIM Note: maturase Location: 4817-5 030 bp Feature: gene Location: 6100-6732 bp Ori: OGJ94524.1 Feature: domain Description: NotI Location: 6112-6607 bp Feature: domain Description: NotI Location: 6112-6607 bp Feature: gene Location: 6908-8038 bp Ori: OGJ94525.1 Feature: domain Description: Dcm Location: 6911-8012 bp Feature: domain Description: Dcm Location: 6911-8012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH43_62_32_68_117_130-like (cd08994), CarboxypepD_reg (pfam13620), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NotI (pfam12183), Dcm (COG0270)