myRT

myRT report for GCA_001789245.1_ASM178924v1

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Seq: MFYV01000234.1 Candidatus Raymondbacteria bacterium RifOxyC12_full_50_8 rifoxyc3_full_scaffold_439, whole genome shotgun sequence (32353 bp)
Overview 1 RT 1: 24173-31762 bp Neighborhood of RT #1 [24173, 32214] Dcm NotI RVT_N RVT-GII GIIM CarboxypepD_reg CarboxypepD_reg GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like Feature: gene Location: 24173-25303 bp Ori: OGJ98525.1 Feature: domain Description: Dcm Location: 24176-25277 bp Feature: domain Description: Dcm Location: 241 76-25277 bp Feature: gene Location: 25350-26111 bp Ori: OGJ98526.1 Feature: domain Description: NotI Location: 25377-25986 bp Feature: domain Description: NotI Location: 25377-25986 bp Feature: gene Location: 26921-28429 bp Ori: OGJ98527.1 Feature: domain Description: RVT_N Location: 26972-27212 bp Feature: domain Description: RVT_N Location: 26972-2721 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27260-27881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27260-27881 bp Feature: domain Description: GIIM Note: maturase Location: 27956-28169 bp Feature: domain Description: GIIM Note: maturase Location: 27956-281 69 bp Feature: gene Location: 28578-30014 bp Ori: OGJ98528.1 Feature: domain Description: CarboxypepD_reg Location: 28686-28878 bp Feature: domain Description: CarboxypepD_reg Location: 28686-28878 bp Feature: domain Description: CarboxypepD_reg Location: 29013-29196 bp Feature: domain Description: CarboxypepD_reg Location: 2901 3-291 96 bp Feature: gene Location: 30214-32214 bp Ori: OGJ98529.1 Feature: domain Description: GH43_62_32_68_117_130-like Location: 30832-30925 bp Feature: domain Description: GH43_62_32_68_1 1 7_1 30-like Location: 30832-30925 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 31303-31384 bp Feature: domain Description: GH43_62_32_68_1 1 7_1 30-like Location: 31 303-31 384 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 31660-31762 bp Feature: domain Description: GH43_62_32_68_1 1 7_1 30-like Location: 31 660-31 762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), NotI (pfam12183), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), CarboxypepD_reg (pfam13620), GH43_62_32_68_117_130-like (cd08994)

Seq: MFYV01000168.1 Candidatus Raymondbacteria bacterium RifOxyC12_full_50_8 rifoxyc3_full_scaffold_3082, whole genome shotgun sequence (7889 bp)
Overview 1 RT 1: 4138-6457 bp Neighborhood of RT #1 [4138, 7028] BrnT_toxin RVT-GII GIIM RVT-GII Feature: gene Location: 4138-4437 bp Ori: OGK01521.1 Feature: domain Description: BrnT_toxin Location: 4162-4402 bp Feature: domain Description: BrnT_toxin Location: 4162 -4402 bp Feature: gene Location: 4725-5030 bp Feature: gene Location: 5103-5861 bp Ori: OGK01523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5172-5316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5172 -5316 bp Feature: domain Description: GIIM Note: maturase Location: 5376-5607 bp Feature: domain Description: GIIM Note: maturase Location: 5376-5607 bp Feature: gene Location: 5872-7028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6076-6457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6076-6457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnT_toxin (pfam04365), RVT-GII, GIIM (pfam08388)

Seq: MFYV01000163.1 Candidatus Raymondbacteria bacterium RifOxyC12_full_50_8 rifoxyc3_full_scaffold_3025, whole genome shotgun sequence (5985 bp)
Overview 1 RT 1: 967-5019 bp Neighborhood of RT #1 [967, 5150] COG4447 COG4447 RVT-GII GIIM PIN_VapC-like AcrR Feature: gene Location: 967-1989 bp Ori: OGK01750.1 Feature: domain Description: COG4447 Location: 1144-1474 bp Feature: domain Description: COG4447 Location: 1144-1474 bp Feature: domain Description: COG4447 Location: 1780-1975 bp Feature: domain Description: COG4447 Location: 1780-1975 bp Feature: gene Location: 2206-2595 bp Feature: gene Location: 2733-3392 bp Ori: OGK01752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739-2844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 273 9-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2922-3132 bp Feature: domain Description: GIIM Note: maturase Location: 2922-3 13 2 bp Feature: gene Location: 3786-4256 bp Ori: OGK01753.1 Feature: domain Description: PIN_VapC-like Location: 3834-4182 bp Feature: domain Description: PIN_VapC-like Location: 3 83 4-4182 bp Feature: gene Location: 4464-5150 bp Ori: OGK01754.1 Feature: domain Description: AcrR Location: 4536-5019 bp Feature: domain Description: AcrR Location: 453 6-5019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715), AcrR (COG1309)

Seq: MFYV01000016.1 Candidatus Raymondbacteria bacterium RifOxyC12_full_50_8 rifoxyc3_full_scaffold_1122, whole genome shotgun sequence (16503 bp)
Overview 1 RT 1: 1-4654 bp Neighborhood of RT #1 [1, 4749] Rhs_assc_core RVT-GII GIIM PIN_VapC-like Feature: gene Location: 1-777 bp Feature: domain Description: Rhs_assc_core Location: 37-184 bp Feature: domain Description: Rhs_assc_core Location: 37-184 bp Feature: gene Location: 779-1573 bp Feature: gene Location: 2127-3437 bp Ori: OGK07636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2430-3054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 30-3054 bp Feature: domain Description: GIIM Note: maturase Location: 3126-3336 bp Feature: domain Description: GIIM Note: maturase Location: 3126-3336 bp Feature: gene Location: 4070-4249 bp Feature: gene Location: 4252-4749 bp Ori: OGK07638.1 Feature: domain Description: PIN_VapC-like Location: 4267-4654 bp Feature: domain Description: PIN_VapC-like Location: 4 267-4 654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715)

Seq: MFYV01000047.1 Candidatus Raymondbacteria bacterium RifOxyC12_full_50_8 rifoxyc3_full_scaffold_1467, whole genome shotgun sequence (17775 bp)
Overview 1 RT 1: 9805-17689 bp Neighborhood of RT #1 [9805, 17739] sensory_box CHD STKc_PknB_like STKc_PknB_like FGE-sulfatase Avd_like RVT-DGRs YhcG YhcG_C Feature: gene Location: 9805-14118 bp Ori: OGK06479.1 Feature: domain Description: sensory_box Location: 9967-10273 bp Feature: domain Description: sensory_box Location: 9967-10273 bp Feature: domain Description: CHD Location: 10360-10909 bp Feature: domain Description: CHD Location: 10360-10909 bp Feature: domain Description: STKc_PknB_like Location: 11002-11284 bp Feature: domain Description: STKc_PknB_like Location: 11002-11284 bp Feature: domain Description: STKc_PknB_like Location: 11407-11917 bp Feature: domain Description: STKc_PknB_like Location: 11407-11917 bp Feature: domain Description: FGE-sulfatase Location: 13381-14104 bp Feature: domain Description: FGE-sulfatase Location: 13381-14104 bp Feature: gene Location: 14192-14533 bp Ori: OGK06480.1 Feature: domain Description: Avd_like Location: 14213-14525 bp Feature: domain Description: Avd_like Location: 14213-145 25 bp Feature: gene Location: 14530-15795 bp Ori: OGK06481.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14737-15385 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14737-15 385 bp Feature: gene Location: 16150-16455 bp Feature: gene Location: 16579-17739 bp Ori: OGK06483.1 Feature: domain Description: YhcG Location: 16648-16900 bp Feature: domain Description: YhcG Location: 16648-16900 bp Feature: domain Description: YhcG_C Location: 17230-17689 bp Feature: domain Description: YhcG_C Location: 17230-17689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), CHD (cd07302), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, YhcG (COG4804), YhcG_C