myRT

myRT report for GCA_001789275.1_ASM178927v1

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Seq: MFYX01000142.1 Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 rifoxyd3_full_scaffold_704, whole genome shotgun sequence (34529 bp)
Overview 1 RT 1: 967-5019 bp Neighborhood of RT #1 [967, 5150] COG4447 COG4447 RVT-GII GIIM PIN_VapC-like AcrR Feature: gene Location: 967-1989 bp Ori: OGK00681.1 Feature: domain Description: COG4447 Location: 1144-1474 bp Feature: domain Description: COG4447 Location: 1 1 44-1 474 bp Feature: domain Description: COG4447 Location: 1780-1975 bp Feature: domain Description: COG4447 Location: 1 780-1 975 bp Feature: gene Location: 2206-2595 bp Feature: gene Location: 2733-3392 bp Ori: OGK00683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739-2844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739-2844 bp Feature: domain Description: GIIM Note: maturase Location: 2922-3132 bp Feature: domain Description: GIIM Note: maturase Location: 2922-31 32 bp Feature: gene Location: 3786-4256 bp Ori: OGK00684.1 Feature: domain Description: PIN_VapC-like Location: 3834-4182 bp Feature: domain Description: PIN_VapC-like Location: 3834-41 82 bp Feature: gene Location: 4464-5150 bp Ori: OGK00685.1 Feature: domain Description: AcrR Location: 4536-5019 bp Feature: domain Description: AcrR Location: 4536-501 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715), AcrR (COG1309)

Seq: MFYX01000015.1 Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 rifoxyd3_full_scaffold_118, whole genome shotgun sequence (78610 bp)
Overview 1 RT 1: 141-8156 bp Neighborhood of RT #1 [141, 8182] GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like CarboxypepD_reg CarboxypepD_reg RVT_N RVT-GII GIIM NotI Dcm Feature: gene Location: 141-2141 bp Ori: OGK06999.1 Feature: domain Description: GH43_62_32_68_117_130-like Location: 759-852 bp Feature: domain Description: GH43_62 _32 _68_117_130-like Location: 759-852 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1230-1311 bp Feature: domain Description: GH43_62 _32 _68_117_130-like Location: 12 30-1311 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1587-1689 bp Feature: domain Description: GH43_62 _32 _68_117_130-like Location: 1587-1689 bp Feature: gene Location: 2341-3750 bp Ori: OGK07000.1 Feature: domain Description: CarboxypepD_reg Location: 2422-2614 bp Feature: domain Description: CarboxypepD_reg Location: 2 42 2 -2 614 bp Feature: domain Description: CarboxypepD_reg Location: 2749-2932 bp Feature: domain Description: CarboxypepD_reg Location: 2 749-2 932 bp Feature: gene Location: 3926-5434 bp Ori: OGK07001.1 Feature: domain Description: RVT_N Location: 3977-4217 bp Feature: domain Description: RVT_N Location: 3977-42 17 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4265-4886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 65-4886 bp Feature: domain Description: GIIM Note: maturase Location: 4961-5174 bp Feature: domain Description: GIIM Note: maturase Location: 4961-5174 bp Feature: gene Location: 6244-6876 bp Ori: OGK07002.1 Feature: domain Description: NotI Location: 6256-6751 bp Feature: domain Description: NotI Location: 62 56-6751 bp Feature: gene Location: 7052-8182 bp Ori: OGK07003.1 Feature: domain Description: Dcm Location: 7055-8156 bp Feature: domain Description: Dcm Location: 7055-8156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH43_62_32_68_117_130-like (cd08994), CarboxypepD_reg (pfam13620), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NotI (pfam12183), Dcm (COG0270)

Seq: MFYX01000028.1 Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 rifoxyd3_full_scaffold_1345, whole genome shotgun sequence (22649 bp)
Overview 1 RT 1: 14633-22517 bp Neighborhood of RT #1 [14633, 22567] sensory_box CHD STKc_PknB_like STKc_PknB_like FGE-sulfatase Avd_like RVT-DGRs YhcG YhcG_C Feature: gene Location: 14633-18946 bp Feature: domain Description: sensory_box Location: 14795-15101 bp Feature: domain Description: sensory_box Location: 14795-15101 bp Feature: domain Description: CHD Location: 15188-15737 bp Feature: domain Description: CHD Location: 15188-1573 7 bp Feature: domain Description: STKc_PknB_like Location: 15830-16109 bp Feature: domain Description: STKc_PknB_like Location: 1583 0-16109 bp Feature: domain Description: STKc_PknB_like Location: 16235-16745 bp Feature: domain Description: STKc_PknB_like Location: 1623 5-16745 bp Feature: domain Description: FGE-sulfatase Location: 18209-18932 bp Feature: domain Description: FGE-sulfatase Location: 18209-1893 2 bp Feature: gene Location: 19020-19361 bp Ori: OGK06536.1 Feature: domain Description: Avd_like Location: 19041-19353 bp Feature: domain Description: Avd_like Location: 19041-193 53 bp Feature: gene Location: 19358-20623 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19565-20213 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19565-20213 bp Feature: gene Location: 20978-21283 bp Feature: gene Location: 21407-22567 bp Ori: OGK06538.1 Feature: domain Description: YhcG Location: 21476-21728 bp Feature: domain Description: YhcG Location: 21476-21728 bp Feature: domain Description: YhcG_C Location: 22058-22517 bp Feature: domain Description: YhcG_C Location: 22058-22517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), CHD (cd07302), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, YhcG (COG4804), YhcG_C

Seq: MFYX01000085.1 Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 rifoxyd3_full_scaffold_2999, whole genome shotgun sequence (10161 bp)
Overview 1 RT 1: 5413-9930 bp Neighborhood of RT #1 [5413, 9930] PIN_VapC-like RVT-GII GIIM Feature: gene Location: 5413-5910 bp Ori: OGK03590.1 Feature: domain Description: PIN_VapC-like Location: 5428-5815 bp Feature: domain Description: PIN_VapC-like Location: 54 28-5815 bp Feature: gene Location: 5913-6092 bp Feature: gene Location: 6725-8035 bp Ori: OGK03592.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7028-7652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7028-7652 bp Feature: domain Description: GIIM Note: maturase Location: 7724-7934 bp Feature: domain Description: GIIM Note: maturase Location: 7724 -7934 bp Feature: gene Location: 8589-9383 bp Feature: gene Location: 9385-9930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PIN_VapC-like (cd18715), RVT-GII, GIIM (pfam08388)

Seq: MFYX01000047.1 Candidatus Raymondbacteria bacterium RIFOXYD12_FULL_49_13 rifoxyd3_full_scaffold_1742, whole genome shotgun sequence (11717 bp)
Overview 1 RT 1: 4144-8532 bp Neighborhood of RT #1 [4144, 8606] BrnT_toxin RVT-GII GIIM RVT-GII CopG_antitoxin Feature: gene Location: 4144-4443 bp Ori: OGK05798.1 Feature: domain Description: BrnT_toxin Location: 4168-4408 bp Feature: domain Description: BrnT_toxin Location: 4168-4408 bp Feature: gene Location: 4731-5036 bp Feature: gene Location: 5109-5867 bp Ori: OGK05800.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5178-5322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 178-5 322 bp Feature: domain Description: GIIM Note: maturase Location: 5382-5613 bp Feature: domain Description: GIIM Note: maturase Location: 5 382-5 613 bp Feature: gene Location: 5878-7126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6082-6463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6082-6463 bp Feature: gene Location: 7767-7949 bp Feature: gene Location: 8280-8606 bp Ori: OGK05802.1 Feature: domain Description: CopG_antitoxin Location: 8298-8532 bp Feature: domain Description: CopG_antitoxin Location: 8298-85 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnT_toxin (pfam04365), RVT-GII, GIIM (pfam08388), CopG_antitoxin (pfam12441)