myRT

myRT report for GCA_001797525.1_ASM179752v1

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Seq: MGPY01000039.1 Candidatus Raymondbacteria bacterium RIFOXYB2_FULL_49_35 rifoxyb2_full_scaffold_221, whole genome shotgun sequence (58521 bp)
Overview 1 RT 1: 1-4670 bp Neighborhood of RT #1 [1, 4765] RVT-GII GIIM PIN_VapC-like Feature: gene Location: 1-793 bp Feature: gene Location: 795-1589 bp Feature: gene Location: 2143-3453 bp Ori: OGP43571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446-3070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2446-3070 bp Feature: domain Description: GIIM Note: maturase Location: 3142-3352 bp Feature: domain Description: GIIM Note: maturase Location: 31 42-3352 bp Feature: gene Location: 4086-4265 bp Feature: gene Location: 4268-4765 bp Ori: OGP43573.1 Feature: domain Description: PIN_VapC-like Location: 4283-4670 bp Feature: domain Description: PIN_VapC-like Location: 4283-4670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715)

Seq: MGPY01000003.1 Candidatus Raymondbacteria bacterium RIFOXYB2_FULL_49_35 rifoxyb2_full_scaffold_112, whole genome shotgun sequence (79781 bp)
Overview 1 RT 1: 141-8156 bp Neighborhood of RT #1 [141, 8182] GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like GH43_62_32_68_117_130-like CarboxypepD_reg CarboxypepD_reg RVT_N RVT-GII GIIM NotI Dcm Feature: gene Location: 141-2141 bp Ori: OGP45470.1 Feature: domain Description: GH43_62_32_68_117_130-like Location: 759-852 bp Feature: domain Description: GH43_62 _32 _68_117_130-like Location: 759-852 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1230-1311 bp Feature: domain Description: GH43_62 _32 _68_117_130-like Location: 12 30-1311 bp Feature: domain Description: GH43_62_32_68_117_130-like Location: 1587-1689 bp Feature: domain Description: GH43_62 _32 _68_117_130-like Location: 1587-1689 bp Feature: gene Location: 2341-3750 bp Ori: OGP45471.1 Feature: domain Description: CarboxypepD_reg Location: 2422-2614 bp Feature: domain Description: CarboxypepD_reg Location: 2 42 2 -2 614 bp Feature: domain Description: CarboxypepD_reg Location: 2749-2932 bp Feature: domain Description: CarboxypepD_reg Location: 2 749-2 932 bp Feature: gene Location: 3926-5434 bp Ori: OGP45472.1 Feature: domain Description: RVT_N Location: 3977-4217 bp Feature: domain Description: RVT_N Location: 3977-42 17 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4265-4886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 65-4886 bp Feature: domain Description: GIIM Note: maturase Location: 4961-5174 bp Feature: domain Description: GIIM Note: maturase Location: 4961-5174 bp Feature: gene Location: 6244-6876 bp Ori: OGP45473.1 Feature: domain Description: NotI Location: 6256-6751 bp Feature: domain Description: NotI Location: 62 56-6751 bp Feature: gene Location: 7052-8182 bp Ori: OGP45474.1 Feature: domain Description: Dcm Location: 7055-8156 bp Feature: domain Description: Dcm Location: 7055-8156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GH43_62_32_68_117_130-like (cd08994), CarboxypepD_reg (pfam13620), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), NotI (pfam12183), Dcm (COG0270)

Seq: MGPY01000040.1 Candidatus Raymondbacteria bacterium RIFOXYB2_FULL_49_35 rifoxyb2_full_scaffold_225, whole genome shotgun sequence (62625 bp)
Overview 1 RT 1: 54550-62434 bp Neighborhood of RT #1 [54550, 62484] sensory_box CHD STKc_PknB_like STKc_PknB_like FGE-sulfatase Avd_like RVT-DGRs YhcG YhcG_C Feature: gene Location: 54550-58863 bp Ori: OGP43546.1 Feature: domain Description: sensory_box Location: 54712-55018 bp Feature: domain Description: sensory_box Location: 54712-55018 bp Feature: domain Description: CHD Location: 55105-55654 bp Feature: domain Description: CHD Location: 55105-55654 bp Feature: domain Description: STKc_PknB_like Location: 55747-56029 bp Feature: domain Description: STKc_PknB_like Location: 55747-56029 bp Feature: domain Description: STKc_PknB_like Location: 56152-56662 bp Feature: domain Description: STKc_PknB_like Location: 56152-56662 bp Feature: domain Description: FGE-sulfatase Location: 58126-58849 bp Feature: domain Description: FGE-sulfatase Location: 58126-58849 bp Feature: gene Location: 58937-59278 bp Ori: OGP43547.1 Feature: domain Description: Avd_like Location: 58958-59270 bp Feature: domain Description: Avd_like Location: 58958-59270 bp Feature: gene Location: 59275-60540 bp Ori: OGP43548.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59482-60130 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59482-6013 0 bp Feature: gene Location: 60895-61200 bp Feature: gene Location: 61324-62484 bp Ori: OGP43550.1 Feature: domain Description: YhcG Location: 61393-61645 bp Feature: domain Description: YhcG Location: 613 93 -61645 bp Feature: domain Description: YhcG_C Location: 61975-62434 bp Feature: domain Description: YhcG_C Location: 61975-6243 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sensory_box (TIGR00229), CHD (cd07302), STKc_PknB_like (cd14014), FGE-sulfatase (pfam03781), Avd_like (cd16376), RVT-DGRs, YhcG (COG4804), YhcG_C

Seq: MGPY01000113.1 Candidatus Raymondbacteria bacterium RIFOXYB2_FULL_49_35 rifoxyb2_full_scaffold_98, whole genome shotgun sequence (87734 bp)
Overview 1 RT 1: 990-5042 bp Neighborhood of RT #1 [990, 5173] COG4447 COG4447 RVT-GII GIIM PIN_VapC-like AcrR Feature: gene Location: 990-2012 bp Ori: OGP39211.1 Feature: domain Description: COG4447 Location: 1167-1497 bp Feature: domain Description: COG4 4 4 7 Location: 1167-14 97 bp Feature: domain Description: COG4447 Location: 1803-1998 bp Feature: domain Description: COG4 4 4 7 Location: 1803-1998 bp Feature: gene Location: 2229-2618 bp Feature: gene Location: 2756-3415 bp Ori: OGP39213.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2762-2867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2762-2867 bp Feature: domain Description: GIIM Note: maturase Location: 2945-3155 bp Feature: domain Description: GIIM Note: maturase Location: 294 5-3155 bp Feature: gene Location: 3809-4279 bp Ori: OGP39214.1 Feature: domain Description: PIN_VapC-like Location: 3857-4205 bp Feature: domain Description: PIN_VapC-like Location: 3857-4 205 bp Feature: gene Location: 4487-5173 bp Ori: OGP39215.1 Feature: domain Description: AcrR Location: 4559-5042 bp Feature: domain Description: AcrR Location: 4 559-504 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4447 (Uncharacterized protein related to plant photosystem II stability/assembly factor ), RVT-GII, GIIM (pfam08388), PIN_VapC-like (cd18715), AcrR (COG1309)

Seq: MGPY01000031.1 Candidatus Raymondbacteria bacterium RIFOXYB2_FULL_49_35 rifoxyb2_full_scaffold_1966, whole genome shotgun sequence (11764 bp)
Overview 1 RT 1: 3142-7595 bp Neighborhood of RT #1 [3142, 7630] CopG_antitoxin RVT-GII RVT-GII GIIM BrnT_toxin Feature: gene Location: 3142-3468 bp Ori: OGP43863.1 Feature: domain Description: CopG_antitoxin Location: 3160-3394 bp Feature: domain Description: CopG_antitoxin Location: 3160-3394 bp Feature: gene Location: 3799-3981 bp Feature: gene Location: 4648-5896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4852-5233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485 2-5 233 bp Feature: gene Location: 5907-6665 bp Ori: OGP43865.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5976-6120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 976-6120 bp Feature: domain Description: GIIM Note: maturase Location: 6180-6411 bp Feature: domain Description: GIIM Note: maturase Location: 6180-6411 bp Feature: gene Location: 6738-7043 bp Feature: gene Location: 7331-7630 bp Ori: OGP43867.1 Feature: domain Description: BrnT_toxin Location: 7355-7595 bp Feature: domain Description: BrnT_toxin Location: 735 5 -75 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CopG_antitoxin (pfam12441), RVT-GII, GIIM (pfam08388), BrnT_toxin (pfam04365)