myRT

myRT report for GCA_001798605.1_ASM179860v1

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Seq: MGST01000139.1 Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 rifixya3_full_scaffold_299, whole genome shotgun sequence (44915 bp)
Overview 1 RT 1: 19529-28076 bp Neighborhood of RT #1 [19529, 28076] choice_anch_D YfaP ADP_ribosyl_GH RVT-Retrons SWIM Feature: gene Location: 19529-21013 bp Ori: OGQ87913.1 Feature: domain Description: choice_anch_D Location: 19661-19961 bp Feature: domain Description: choice_anch_D Location: 1 9661 -1 9961 bp Feature: domain Description: YfaP Location: 20621-20864 bp Feature: domain Description: YfaP Location: 20621 -20864 bp Feature: gene Location: 21144-22223 bp Ori: OGQ87914.1 Feature: domain Description: ADP_ribosyl_GH Location: 21309-22164 bp Feature: domain Description: ADP_ribosyl_GH Location: 21 309-221 64 bp Feature: gene Location: 22229-23614 bp Ori: OGQ87915.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22769-23384 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22769-23384 bp Feature: gene Location: 23881-25575 bp Ori: OGQ87916.1 Feature: domain Description: SWIM Location: 25456-25531 bp Feature: domain Description: SWIM Location: 25456-25531 bp Feature: gene Location: 25572-28076 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT choice_anch_D (NF012200), YfaP (COG4676), ADP_ribosyl_GH (pfam03747), RVT-Retrons, SWIM (pfam04434)

Seq: MGST01000047.1 Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 rifixya3_full_scaffold_1535, whole genome shotgun sequence (18006 bp)
Overview 1 RT 1: 15174-17488 bp Neighborhood of RT #1 [15174, 17487] DUF4160 HTH_37 RVT-GII group_II_RT_mat RVT-GII Feature: gene Location: 15174-15368 bp Ori: OGQ90815.1 Feature: domain Description: DUF4160 Location: 15198-15357 bp Feature: domain Description: DUF4160 Location: 15198-15357 bp Feature: gene Location: 15365-15829 bp Ori: OGQ90816.1 Feature: domain Description: HTH_37 Location: 15623-15815 bp Feature: domain Description: HTH_37 Location: 1562 3-15815 bp Feature: gene Location: 15855-16061 bp Ori: OGQ90817.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15903-16014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15903-16014 bp Feature: gene Location: 16068-16286 bp Ori: OGQ90818.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 16170-16284 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 16170-162 84 bp Feature: gene Location: 16286-16546 bp Feature: gene Location: 16768-17487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17017-17488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17017-17488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4160 (pfam13711), HTH_37 (pfam13744), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: MGST01000271.1 Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 rifixya3_full_scaffold_579, whole genome shotgun sequence (31832 bp)
Overview 1 RT 1: 1396-8535 bp Neighborhood of RT #1 [1396, 8535] gmx_gmx_gmx_TIGR02266 STKc_PknB_like PilZ FhlA RVT-GII GIIM DUF1565 Beta_helix DUF4990 Feature: gene Location: 1396-2802 bp Ori: OGQ81683.1 Feature: domain Description: gmx_gmx_gmx_TIGR02266 Location: 1489-1729 bp Feature: domain Description: gmx_gmx_gmx_TIGR02266 Location: 1489-1729 bp Feature: domain Description: STKc_PknB_like Location: 1990-2785 bp Feature: domain Description: STKc_PknB_like Location: 1990-2785 bp Feature: gene Location: 3064-4839 bp Ori: OGQ81684.1 Feature: domain Description: PilZ Location: 3082-3394 bp Feature: domain Description: PilZ Location: 3 082-3 3 94 bp Feature: domain Description: FhlA Location: 3838-4834 bp Feature: domain Description: FhlA Location: 3 83 8-483 4 bp Feature: gene Location: 4959-5369 bp Ori: OGQ81685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4962-5064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4962-5064 bp Feature: domain Description: GIIM Note: maturase Location: 5118-5280 bp Feature: domain Description: GIIM Note: maturase Location: 5118-5280 bp Feature: gene Location: 5638-7947 bp Ori: OGQ81686.1 Feature: domain Description: DUF1565 Location: 6751-6859 bp Feature: domain Description: DUF1565 Location: 6751-6859 bp Feature: domain Description: Beta_helix Location: 6985-7585 bp Feature: domain Description: Beta_helix Location: 6985-7585 bp Feature: domain Description: DUF4990 Location: 7726-7891 bp Feature: domain Description: DUF4990 Location: 7726-7891 bp Feature: gene Location: 8116-8535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT gmx_gmx_gmx_TIGR02266, STKc_PknB_like (cd14014), PilZ (pfam07238), FhlA (COG3604), RVT-GII, GIIM (pfam08388), DUF1565 (pfam07602), Beta_helix (pfam13229), DUF4990 (pfam16380)