myRT

myRT report for GCA_001801625.1_ASM180162v1

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Seq: MGYE01000021.1 Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 rifcsphigho2_12_scaffold_15657, whole genome shotgun sequence (8573 bp)
Overview 1 RT 1: 602-8351 bp Neighborhood of RT #1 [602, 8380] PRK12467 EntF RVT-GII GIIM SspB sspA Feature: gene Location: 602-3964 bp Ori: OGT58436.1 Feature: domain Description: PRK12467 Location: 650-3683 bp Feature: domain Description: PRK1 2467 Location: 650-3683 bp Feature: gene Location: 4084-5262 bp Ori: OGT58437.1 Feature: domain Description: EntF Location: 4318-4489 bp Feature: domain Description: EntF Location: 431 8-4489 bp Feature: gene Location: 5336-6580 bp Ori: OGT58440.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5528-6143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5528-61 43 bp Feature: domain Description: GIIM Note: maturase Location: 6191-6389 bp Feature: domain Description: GIIM Note: maturase Location: 61 91 -6389 bp Feature: gene Location: 7233-7709 bp Ori: OGT58438.1 Feature: domain Description: SspB Location: 7242-7704 bp Feature: domain Description: SspB Location: 7242-7704 bp Feature: gene Location: 7727-8380 bp Ori: OGT58439.1 Gene: sspA Feature: domain Description: sspA Location: 7730-8351 bp Feature: domain Description: sspA Location: 7730-8351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12467 (peptide synthase; Provisional), EntF (COG3319), RVT-GII, GIIM (pfam08388), SspB (pfam04386), sspA (PRK09481)

Seq: MGYE01000011.1 Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 rifcsphigho2_12_scaffold_11997, whole genome shotgun sequence (10094 bp)
Overview 1 RT 1: 134-2896 bp Neighborhood of RT #1 [134, 2934] LZ_Tnp_IS66 DDE_Tnp_IS66 RVT-DGRs HprK_C PqqD Feature: gene Location: 134-625 bp Ori: OGT58850.1 Feature: domain Description: LZ_Tnp_IS66 Location: 242-461 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 42 -461 bp Feature: domain Description: DDE_Tnp_IS66 Location: 479-605 bp Feature: domain Description: DDE_Tnp_IS66 Location: 479-605 bp Feature: gene Location: 622-825 bp Feature: gene Location: 1257-1595 bp Ori: OGT58852.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1260-1476 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12 60-1476 bp Feature: gene Location: 1868-2632 bp Ori: OGT58853.1 Feature: domain Description: HprK_C Location: 2051-2216 bp Feature: domain Description: HprK_C Location: 2 051-2 2 16 bp Feature: gene Location: 2629-2934 bp Ori: OGT58854.1 Feature: domain Description: PqqD Location: 2698-2896 bp Feature: domain Description: PqqD Location: 2 698-2 896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050), RVT-DGRs, HprK_C (cd01918), PqqD (pfam05402)

Seq: MGYE01000037.1 Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 rifcsphigho2_12_scaffold_24068, whole genome shotgun sequence (6585 bp)
Overview 1 RT 1: 4167-5975 bp Neighborhood of RT #1 [4167, 6025] InsE YkfC RVT-GII PHA02517 Feature: gene Location: 4167-4460 bp Ori: OGT57597.1 Feature: domain Description: InsE Location: 4173-4437 bp Feature: domain Description: InsE Location: 4173 -443 7 bp Feature: gene Location: 4670-4945 bp Ori: OGT57598.1 Feature: domain Description: YkfC Location: 4679-4928 bp Feature: domain Description: YkfC Location: 4679-4928 bp Feature: gene Location: 5122-5331 bp Ori: OGT57599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5131-5233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 513 1-523 3 bp Feature: gene Location: 5588-6025 bp Ori: OGT57600.1 Feature: domain Description: PHA02517 Location: 5594-5975 bp Feature: domain Description: PHA02517 Location: 5594-5975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: MGYE01000075.1 Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 rifcsphigho2_12_scaffold_69434, whole genome shotgun sequence (5815 bp)
Overview 1 RT 1: 1-5718 bp Neighborhood of RT #1 [1, 5815] RVT-GII GIIM YdfJ LIM4_abLIM Feature: gene Location: 1-541 bp Feature: gene Location: 605-1111 bp Feature: gene Location: 1281-2591 bp Ori: OGT54597.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512-2130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1512-2130 bp Feature: domain Description: GIIM Note: maturase Location: 2175-2376 bp Feature: domain Description: GIIM Note: maturase Location: 2175-2376 bp Feature: gene Location: 3335-5557 bp Ori: OGT54596.1 Feature: domain Description: YdfJ Location: 3368-5543 bp Feature: domain Description: YdfJ Location: 3368-554 3 bp Feature: gene Location: 5583-5815 bp Feature: domain Description: LIM4_abLIM Location: 5613-5718 bp Feature: domain Description: LIM4 _abLIM Location: 5613-5718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YdfJ (COG2409), LIM4_abLIM (cd09330)