myRT

myRT report for GCA_001801965.1_ASM180196v1

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Seq: MGYZ01000203.1 Gammaproteobacteria bacterium RIFOXYA12_FULL_61_12 rifixya3_full_scaffold_7954, whole genome shotgun sequence (5008 bp)
Overview 1 RT 1: 1-4993 bp Neighborhood of RT #1 [1, 4995] TonB-copper RVT-DGRs Avd_like PEGA YfmG Feature: gene Location: 1-1785 bp Ori: OGT87912.1 Feature: domain Description: TonB-copper Location: 4-1783 bp Feature: domain Description: TonB-copper Location: 4-1 783 bp Feature: gene Location: 2113-3171 bp Ori: OGT87913.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2320-2956 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2320-2956 bp Feature: gene Location: 3502-3873 bp Ori: OGT87914.1 Feature: domain Description: Avd_like Location: 3535-3835 bp Feature: domain Description: Avd_like Location: 3535-3835 bp Feature: gene Location: 4003-4995 bp Ori: OGT87915.1 Feature: domain Description: PEGA Location: 4015-4225 bp Feature: domain Description: PEGA Location: 401 5-4225 bp Feature: domain Description: YfmG Location: 4240-4993 bp Feature: domain Description: YfmG Location: 4240-4993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TonB-copper (TIGR01778), RVT-DGRs, Avd_like (cd16376), PEGA (pfam08308), YfmG (COG1262)

Seq: MGYZ01000090.1 Gammaproteobacteria bacterium RIFOXYA12_FULL_61_12 rifixya3_full_scaffold_3030, whole genome shotgun sequence (11093 bp)
Overview 1 RT 1: 132-7121 bp Neighborhood of RT #1 [132, 7135] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII GIIM GT4_PimA-like Feature: gene Location: 132-1379 bp Ori: OGT92695.1 Feature: domain Description: zf-ISL3 Location: 273-396 bp Feature: domain Description: zf-ISL3 Location: 2 73-396 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 414-561 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 414-561 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 606-1335 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 606-1335 bp Feature: gene Location: 2248-3402 bp Ori: OGT92699.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2365-3034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 365-3034 bp Feature: domain Description: GIIM Note: maturase Location: 3112-3307 bp Feature: domain Description: GIIM Note: maturase Location: 3112 -3307 bp Feature: gene Location: 5197-5493 bp Feature: gene Location: 6002-7135 bp Ori: OGT92700.1 Feature: domain Description: GT4_PimA-like Location: 6023-7121 bp Feature: domain Description: GT4_PimA-like Location: 602 3-712 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801)

Seq: MGYZ01000023.1 Gammaproteobacteria bacterium RIFOXYA12_FULL_61_12 rifixya3_full_scaffold_1461, whole genome shotgun sequence (22147 bp)
Overview 1 RT 1: 12347-17403 bp Neighborhood of RT #1 [12347, 17417] COG1569 RVT-UG5 COG2405 UPF0175 Feature: gene Location: 12347-12586 bp Feature: gene Location: 12583-13005 bp Feature: domain Description: COG1569 Location: 12586-12979 bp Feature: domain Description: COG1569 Location: 12586-12979 bp Feature: gene Location: 13513-16551 bp Ori: OGT94063.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14011-14485 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 14011-14485 bp Feature: gene Location: 16688-17176 bp Ori: OGT94064.1 Feature: domain Description: COG2405 Location: 16712-17174 bp Feature: domain Description: COG2405 Location: 16712-17174 bp Feature: gene Location: 17163-17417 bp Ori: OGT94065.1 Feature: domain Description: UPF0175 Location: 17202-17403 bp Feature: domain Description: UPF0175 Location: 17202-17403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-UG5, COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), UPF0175 (pfam03683)

Seq: MGYZ01000172.1 Gammaproteobacteria bacterium RIFOXYA12_FULL_61_12 rifixya3_full_scaffold_613, whole genome shotgun sequence (30933 bp)
Overview 1 RT 1: 21769-27140 bp Neighborhood of RT #1 [21769, 27154] COG2402 RVT-CRISPR Cas1_I-II-III archeal_HJR accA Feature: gene Location: 21769-22203 bp Ori: OGT89104.1 Feature: domain Description: COG2402 Location: 21784-22147 bp Feature: domain Description: COG24 02 Location: 21784 -2214 7 bp Feature: gene Location: 22200-22418 bp Feature: gene Location: 22567-24597 bp Ori: OGT89106.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22789-23383 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22789-23383 bp Feature: domain Description: Cas1_I-II-III Location: 23608-24559 bp Feature: domain Description: Cas1_I-II-III Location: 23608-24 559 bp Feature: gene Location: 24678-25247 bp Feature: domain Description: archeal_HJR Location: 24879-25041 bp Feature: domain Description: archeal_HJR Location: 24 879-2504 1 bp Feature: gene Location: 26195-27154 bp Ori: OGT89107.1 Feature: domain Description: accA Location: 26201-27140 bp Feature: domain Description: accA Location: 26201-2714 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2402 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-CRISPR, Cas1_I-II-III (cl00656), archeal_HJR, accA (TIGR00513)