myRT

myRT report for GCA_001801995.1_ASM180199v1

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Seq: MGZB01000005.1 Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 rifoxyd3_full_scaffold_122, whole genome shotgun sequence (71186 bp)
Overview 1 RT 1: 44572-49238 bp Neighborhood of RT #1 [44572, 49294] CRISPR_Cas6 archeal_HJR RVT-CRISPR Cas1_I-II-III COG2402 Feature: gene Location: 44572-45579 bp Ori: OGT91291.1 Feature: domain Description: CRISPR_Cas6 Location: 45127-45487 bp Feature: domain Description: CRISPR_Cas6 Location: 451 27-45487 bp Feature: gene Location: 45807-46385 bp Ori: OGT91292.1 Feature: domain Description: archeal_HJR Location: 46008-46170 bp Feature: domain Description: archeal_HJR Location: 46008-461 70 bp Feature: gene Location: 46466-48496 bp Ori: OGT91293.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 46688-47282 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 46688-47282 bp Feature: domain Description: Cas1_I-II-III Location: 47507-48458 bp Feature: domain Description: Cas1 _I-II-III Location: 47507-48458 bp Feature: gene Location: 48591-48863 bp Feature: gene Location: 48860-49294 bp Ori: OGT91295.1 Feature: domain Description: COG2402 Location: 48875-49238 bp Feature: domain Description: COG2402 Location: 48875-49238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), archeal_HJR, RVT-CRISPR, Cas1_I-II-III (cl00656), COG2402 (Predicted nucleic acid-binding protein, contains PIN domain )

Seq: MGZB01000002.1 Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 rifoxyd3_full_scaffold_11, whole genome shotgun sequence (182034 bp)
Overview 1 RT 1: 11650-16706 bp Neighborhood of RT #1 [11650, 16720] COG1569 RVT-UG5 COG2405 UPF0175 Feature: gene Location: 11650-11889 bp Feature: gene Location: 11886-12308 bp Feature: domain Description: COG1569 Location: 11889-12282 bp Feature: domain Description: COG1569 Location: 11889-12 2 82 bp Feature: gene Location: 12816-15854 bp Ori: OGT91422.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13314-13788 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13314-13788 bp Feature: gene Location: 15991-16479 bp Ori: OGT91423.1 Feature: domain Description: COG2405 Location: 16015-16477 bp Feature: domain Description: COG2 405 Location: 16015-16477 bp Feature: gene Location: 16466-16720 bp Ori: OGT91424.1 Feature: domain Description: UPF0175 Location: 16505-16706 bp Feature: domain Description: UPF0175 Location: 16505-16706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1569 (Predicted nucleic acid-binding protein, contains PIN domain ), RVT-UG5, COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), UPF0175 (pfam03683)

Seq: MGZB01000055.1 Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 rifoxyd3_full_scaffold_94, whole genome shotgun sequence (307759 bp)
Overview 1 RT 1: 19078-26539 bp Neighborhood of RT #1 [19078, 26580] STKc_PknB_like PEGA YfmG Avd_like RVT-DGRs TonB-copper TauE Feature: gene Location: 19078-21303 bp Ori: OGT88308.1 Feature: domain Description: STKc_PknB_like Location: 19129-19960 bp Feature: domain Description: STKc_PknB_like Location: 19129-19960 bp Feature: domain Description: PEGA Location: 20323-20533 bp Feature: domain Description: PEGA Location: 203 23 -2053 3 bp Feature: domain Description: YfmG Location: 20548-21301 bp Feature: domain Description: YfmG Location: 20548-213 01 bp Feature: gene Location: 21433-21804 bp Ori: OGT88309.1 Feature: domain Description: Avd_like Location: 21466-21766 bp Feature: domain Description: Avd_like Location: 21466-21766 bp Feature: gene Location: 22135-23193 bp Ori: OGT88310.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22342-22978 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 223 42-22978 bp Feature: gene Location: 23521-25635 bp Ori: OGT88311.1 Feature: domain Description: TonB-copper Location: 23710-25633 bp Feature: domain Description: TonB-copper Location: 23 710-2563 3 bp Feature: gene Location: 25873-26580 bp Ori: OGT88312.1 Feature: domain Description: TauE Location: 25885-26539 bp Feature: domain Description: TauE Location: 25885-2653 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STKc_PknB_like (cd14014), PEGA (pfam08308), YfmG (COG1262), Avd_like (cd16376), RVT-DGRs, TonB-copper (TIGR01778), TauE (pfam01925)