myRT

myRT report for GCA_001803205.1_ASM180320v1

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Seq: MHBE01000044.1 Lentisphaerae bacterium GWF2_38_69 gwf2_scaffold_428, whole genome shotgun sequence (78427 bp)
Overview 1 RT 1: 1-6733 bp Neighborhood of RT #1 [1, 6747] Rhs_assc_core group_II_RT_mat RVT-GII pyruv_ox_red Feature: gene Location: 1-1152 bp Feature: domain Description: Rhs_assc_core Location: 187-448 bp Feature: domain Description: Rhs_assc_core Location: 1 87-448 bp Feature: gene Location: 1368-1808 bp Ori: OGV18600.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 1383-1674 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 383-1 674 bp Feature: gene Location: 1783-2043 bp Ori: OGV18601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1786-2032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 786-2032 bp Feature: gene Location: 2461-2640 bp Feature: gene Location: 3214-6747 bp Ori: OGV18603.1 Feature: domain Description: pyruv_ox_red Location: 3232-6733 bp Feature: domain Description: pyruv_ox_red Location: 3232-6733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rhs_assc_core (TIGR03696), group_II_RT_mat (TIGR04416), RVT-GII, pyruv_ox_red (TIGR02176)

Seq: MHBE01000018.1 Lentisphaerae bacterium GWF2_38_69 gwf2_scaffold_1848, whole genome shotgun sequence (57875 bp)
Overview 1 RT 1: 1-3813 bp 2 RT 2: 12428-22927 bp Neighborhood of RT #1 [1, 3836] RVT-GII RVT-GII RVT-GII glpT PRK15407 Neighborhood of RT #2 [12428, 23298] HpcH_HpaI COG5421 RVT-GII xerS INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM DPM1_like_bac Feature: gene Location: 1-216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64-148 bp Feature: gene Location: 237-467 bp Ori: OGV20428.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 252-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 -447 bp Feature: gene Location: 476-883 bp Ori: OGV20429.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 479-755 bp Feature: gene Location: 880-2289 bp Ori: OGV20430.1 Gene: glpT Feature: domain Description: glpT Location: 907-2251 bp Feature: domain Description: glpT Location: 907-2 2 51 bp Feature: gene Location: 2499-3836 bp Ori: OGV20431.1 Feature: domain Description: PRK15407 Location: 2508-3813 bp Feature: domain Description: PRK15407 Location: 2 508-3813 bp Feature: gene Location: 12428-13225 bp Ori: OGV20441.1 Feature: domain Description: HpcH_HpaI Location: 12590-12962 bp Feature: domain Description: HpcH_HpaI Location: 12 590-12 962 bp Feature: gene Location: 13892-15793 bp Ori: OGV20442.1 Feature: domain Description: COG5421 Location: 14498-15581 bp Feature: domain Description: COG542 1 Location: 14498-15581 bp Feature: gene Location: 16895-17533 bp Ori: OGV20443.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17099-17486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17099-17486 bp Feature: gene Location: 17643-18878 bp Ori: OGV20479.1 Feature: domain Description: xerS Location: 17997-18120 bp Feature: domain Description: xerS Location: 17997-1812 0 bp Feature: domain Description: INT_RitA_C_like Location: 18315-18846 bp Feature: domain Description: INT_RitA_C_like Location: 18315-18846 bp Feature: gene Location: 18871-19857 bp Ori: OGV20444.1 Feature: domain Description: INT_RitB_C_like Location: 19207-19789 bp Feature: domain Description: INT_RitB_C_like Location: 192 07-19789 bp Feature: gene Location: 19844-20857 bp Ori: OGV20445.1 Feature: domain Description: Phage_int_SAM_1 Location: 19892-20141 bp Feature: domain Description: Phage_int_SAM_1 Location: 19892 -2 0141 bp Feature: domain Description: INT_RitC_C_like Location: 20222-20774 bp Feature: domain Description: INT_RitC_C_like Location: 2 02 2 2 -2 0774 bp Feature: gene Location: 21008-21610 bp Ori: OGV20446.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21014-21233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1014-2 12 33 bp Feature: domain Description: GIIM Note: maturase Location: 21311-21518 bp Feature: domain Description: GIIM Note: maturase Location: 2 1311-2 1518 bp Feature: gene Location: 21898-22077 bp Feature: gene Location: 22342-23298 bp Ori: OGV20448.1 Feature: domain Description: DPM1_like_bac Location: 22384-22927 bp Feature: domain Description: DPM1_like_bac Location: 2 2 384-2 2 92 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, glpT (TIGR00712), PRK15407 (lipopolysaccharide biosynthesis protein RfbH; Provisional), HpcH_HpaI (pfam03328), COG5421 (Transposase ), xerS (PRK05084), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182)
GIIM (pfam08388), DPM1_like_bac (cd04187)

Seq: MHBE01000022.1 Lentisphaerae bacterium GWF2_38_69 gwf2_scaffold_1976, whole genome shotgun sequence (29201 bp)
Overview 1 RT 1: 25313-29184 bp Neighborhood of RT #1 [25313, 29184] NuoG 2Fe-2S_thioredx NuoF RVT-UNC Feature: gene Location: 25313-26020 bp Ori: OGV20227.1 Feature: domain Description: NuoG Location: 25328-25943 bp Feature: domain Description: NuoG Location: 253 28-25943 bp Feature: gene Location: 26023-27849 bp Ori: OGV20228.1 Feature: domain Description: 2Fe-2S_thioredx Location: 26065-26488 bp Feature: domain Description: 2Fe-2S_thioredx Location: 26065-26488 bp Feature: domain Description: NuoF Location: 26617-27751 bp Feature: domain Description: NuoF Location: 26617-27751 bp Feature: gene Location: 28493-28723 bp Ori: OGV20229.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 28541-28694 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 28541-28694 bp Feature: gene Location: 28750-29184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NuoG (TIGR01973), 2Fe-2S_thioredx (pfam01257), NuoF (COG1894), RVT-UG4/RVT-CRISPR/RVT-UG25/RVT-UG18(RVT-UNC)

Seq: MHBE01000036.1 Lentisphaerae bacterium GWF2_38_69 gwf2_scaffold_3633, whole genome shotgun sequence (18520 bp)
Overview 1 RT 1: 5955-9198 bp Neighborhood of RT #1 [5955, 9224] PqqD Transglut_core3 RVT-UG4 Gp49 HTH_XRE Feature: gene Location: 5955-6248 bp Ori: OGV19164.1 Feature: domain Description: PqqD Location: 6027-6225 bp Feature: domain Description: PqqD Location: 6027-6225 bp Feature: gene Location: 6295-6729 bp Ori: OGV19165.1 Feature: domain Description: Transglut_core3 Location: 6445-6715 bp Feature: domain Description: Transglut_core3 Location: 64 4 5-6715 bp Feature: gene Location: 6731-7795 bp Ori: OGV19166.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7079-7538 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7079-7538 bp Feature: gene Location: 8532-8861 bp Ori: OGV19167.1 Feature: domain Description: Gp49 Location: 8574-8826 bp Feature: domain Description: Gp4 9 Location: 8574 -8826 bp Feature: gene Location: 8889-9224 bp Ori: OGV19176.1 Feature: domain Description: HTH_XRE Location: 9051-9198 bp Feature: domain Description: HTH_XRE Location: 9051-9198 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PqqD (pfam05402), Transglut_core3 (pfam13471), RVT-UG4, Gp49 (pfam05973), HTH_XRE (smart00530)

Seq: MHBE01000006.1 Lentisphaerae bacterium GWF2_38_69 gwf2_scaffold_1243, whole genome shotgun sequence (42641 bp)
Overview 1 RT 1: 38352-42637 bp Neighborhood of RT #1 [38352, 42637] Phage_int_SAM_1 INT_RitA_C_like DDE_Tnp_IS66_C RVT-UG4 Feature: gene Location: 38352-40250 bp Ori: OGV21421.1 Feature: domain Description: Phage_int_SAM_1 Location: 39402-39603 bp Feature: domain Description: Phage_int_SAM_1 Location: 39402-39603 bp Feature: domain Description: INT_RitA_C_like Location: 39693-40206 bp Feature: domain Description: INT_RitA_C_like Location: 39693-40206 bp Feature: gene Location: 40426-40665 bp Ori: OGV21422.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 40510-40618 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 405 10-40618 bp Feature: gene Location: 40643-41605 bp Ori: OGV21423.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 40841-41312 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 40841-41312 bp Feature: gene Location: 41954-42637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), DDE_Tnp_IS66_C (pfam13817), RVT-UG4