myRT

myRT report for GCA_001807185.1_ASM180718v1

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Seq: KV788140.1 Enterococcus sp. HMSC05C03 genomic scaffold Scaffold85, whole genome shotgun sequence (2540 bp)
Overview 1 RT 1: 109-1888 bp Neighborhood of RT #1 [109, 1917] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 109-1917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373-1 1 98 bp Feature: domain Description: Intron_maturas2 Location: 1270-1567 bp Feature: domain Description: Intron_maturas2 Location: 1 270-1 567 bp Feature: domain Description: HNHc Note: nucleases Location: 1744-1888 bp Feature: domain Description: HNHc Note: nucleases Location: 1 744-1 888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KV788061.1 Enterococcus sp. HMSC05C03 genomic scaffold Scaffold327, whole genome shotgun sequence (40195 bp)
Overview 1 RT 1: 29316-33004 bp Neighborhood of RT #1 [29316, 33004] DUF3173 Arm-DNA-bind_4 Phage_int_SAM_3 INT_ICEBs1_C_like RVT-GII Relaxase Feature: gene Location: 29316-29501 bp Feature: domain Description: DUF3173 Location: 29322-29493 bp Feature: domain Description: DUF3173 Location: 2 932 2 -2 9493 bp Feature: gene Location: 29506-30654 bp Feature: domain Description: Arm-DNA-bind_4 Location: 29551-29683 bp Feature: domain Description: Arm-DNA-bind_4 Location: 2 9551-2 9683 bp Feature: domain Description: Phage_int_SAM_3 Location: 29707-29875 bp Feature: domain Description: Phage_int_SAM_3 Location: 2 9707-2 9875 bp Feature: domain Description: INT_ICEBs1_C_like Location: 30073-30598 bp Feature: domain Description: INT_ICEBs1_C_like Location: 30073-30598 bp Feature: gene Location: 31011-31448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31116-31413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31116-31413 bp Feature: gene Location: 32146-32508 bp Feature: domain Description: Relaxase Location: 32176-32473 bp Feature: domain Description: Relaxase Location: 32 176-32 473 bp Feature: gene Location: 32717-33004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3173 (pfam11372), Arm-DNA-bind_4 (pfam14657), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-GII, Relaxase (pfam03432)

Seq: KV788110.1 Enterococcus sp. HMSC05C03 genomic scaffold Scaffold61, whole genome shotgun sequence (1214 bp)
Overview 1 RT 1: 1-793 bp Neighborhood of RT #1 [1, 794] RVT-GII Feature: gene Location: 1-794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 322-793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 22-793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KV788062.1 Enterococcus sp. HMSC05C03 genomic scaffold Scaffold33, whole genome shotgun sequence (14766 bp)
Overview 1 RT 1: 33-4677 bp 2 RT 2: 12104-14653 bp Neighborhood of RT #1 [33, 4677] RVT-GII Lysozyme_like Spr Neighborhood of RT #2 [12104, 14766] Dcm FtsK RVT-GII HNHc Feature: gene Location: 33-893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348-894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 8-894 bp Feature: gene Location: 1607-2557 bp Feature: domain Description: Lysozyme_like Location: 1754-2216 bp Feature: domain Description: Lysozyme_like Location: 1754 -2216 bp Feature: domain Description: Spr Location: 2243-2540 bp Feature: domain Description: Spr Location: 224 3-254 0 bp Feature: gene Location: 2554-4677 bp Feature: gene Location: 12104-13246 bp Feature: domain Description: Dcm Location: 12107-13226 bp Feature: domain Description: Dcm Location: 12107-13226 bp Feature: gene Location: 13292-13672 bp Feature: domain Description: FtsK Location: 13307-13544 bp Feature: domain Description: FtsK Location: 13307-1354 4 bp Feature: gene Location: 13774-14766 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13795-13954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13795-13954 bp Feature: domain Description: HNHc Note: nucleases Location: 14494-14653 bp Feature: domain Description: HNHc Note: nucleases Location: 14 4 94 -14 653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lysozyme_like (pfam13702), Spr (COG0791), RVT-GII, Dcm (COG0270), FtsK (COG1674), HNHc (smart00507)

Seq: KV788105.1 Enterococcus sp. HMSC05C03 genomic scaffold Scaffold588, whole genome shotgun sequence (1609 bp)
Overview 1 RT 1: 27-939 bp Neighborhood of RT #1 [27, 938] RVT-GII Feature: gene Location: 27-938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: KV788053.1 Enterococcus sp. HMSC05C03 genomic scaffold Scaffold3, whole genome shotgun sequence (1411 bp)
Overview 1 RT 1: 78-1236 bp Neighborhood of RT #1 [78, 1322] RVT-GII GIIM Feature: gene Location: 78-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282-939 bp Feature: domain Description: GIIM Note: maturase Location: 1020-1236 bp Feature: domain Description: GIIM Note: maturase Location: 1020-1236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)