myRT

myRT report for GCA_001808555.1_ASM180855v1

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Seq: KV793777.1 Porphyromonas sp. HMSC065F10 genomic scaffold Scaffold611, whole genome shotgun sequence (53857 bp)
Overview 1 RT 1: 34009-40984 bp Neighborhood of RT #1 [34009, 41643] GT4_PimA-like WYL RVT-Retrons recD_rel recD_rel recD_rel Feature: gene Location: 34009-35175 bp Feature: domain Description: GT4_PimA-like Location: 34033-35158 bp Feature: domain Description: GT4_PimA-like Location: 34033-351 58 bp Feature: gene Location: 35576-36655 bp Feature: domain Description: WYL Location: 36062-36620 bp Feature: domain Description: WYL Location: 36062-36620 bp Feature: gene Location: 37360-38559 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37546-38146 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37546-381 46 bp Feature: gene Location: 38552-39529 bp Feature: gene Location: 39538-41643 bp Feature: domain Description: recD_rel Location: 39559-39796 bp Feature: domain Description: recD_rel Location: 39559-39796 bp Feature: domain Description: recD_rel Location: 40051-40291 bp Feature: domain Description: recD_rel Location: 40051 -40291 bp Feature: domain Description: recD_rel Location: 40840-40984 bp Feature: domain Description: recD_rel Location: 40840-40984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT4_PimA-like (cd03801), WYL (pfam13280), RVT-Retrons, recD_rel (TIGR01448)

Seq: KV793730.1 Porphyromonas sp. HMSC065F10 genomic scaffold Scaffold173, whole genome shotgun sequence (109985 bp)
Overview 1 RT 1: 89548-94840 bp Neighborhood of RT #1 [89548, 94842] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_M Feature: gene Location: 89548-90129 bp Feature: domain Description: TraO Location: 89629-90127 bp Feature: domain Description: TraO Location: 8962 9-9012 7 bp Feature: gene Location: 90129-90719 bp Feature: domain Description: Bac_Flav_CT_N Location: 90138-90690 bp Feature: domain Description: Bac_Flav_CT_N Location: 90138-90690 bp Feature: gene Location: 90826-92637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91090-91912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91090-91912 bp Feature: domain Description: Intron_maturas2 Location: 91984-92290 bp Feature: domain Description: Intron_maturas2 Location: 91984-92 2 90 bp Feature: gene Location: 93199-93558 bp Feature: domain Description: Bac_Flav_CT_N Location: 93202-93556 bp Feature: domain Description: Bac_Flav_CT_N Location: 932 02 -93556 bp Feature: gene Location: 93595-94842 bp Feature: domain Description: Bac_Flav_CT_M Location: 93610-94840 bp Feature: domain Description: Bac_Flav_CT_M Location: 93610-94840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_M (TIGR03779)