myRT

myRT report for GCA_001809805.1_ASM180980v1

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Seq: KV798982.1 Pseudomonas sp. HMSC072F09 genomic scaffold Scaffold347, whole genome shotgun sequence (194685 bp)
Overview 1 RT 1: 39601-46716 bp Neighborhood of RT #1 [39601, 46727] clpP tig RVT_N RVT-GII GIIM HNH OmpR PRK10604 Feature: gene Location: 39601-40242 bp Feature: domain Description: clpP Location: 39655-40231 bp Feature: domain Description: clpP Location: 39655-40231 bp Feature: gene Location: 40336-41646 bp Feature: domain Description: tig Location: 40339-41617 bp Feature: domain Description: tig Location: 40339-41 61 7 bp Feature: gene Location: 41776-43479 bp Feature: RT Description: RVT_N Location: 41833-42076 bp Feature: RT Description: RVT_N Location: 41 833-42076 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42121-42757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 21 -42757 bp Feature: domain Description: GIIM Note: maturase Location: 42808-43042 bp Feature: domain Description: GIIM Note: maturase Location: 42808-43042 bp Feature: domain Description: HNH Note: nucleases Location: 43294-43432 bp Feature: domain Description: HNH Note: nucleases Location: 43294-43432 bp Feature: gene Location: 44733-45440 bp Feature: domain Description: OmpR Location: 44757-45423 bp Feature: domain Description: OmpR Location: 44757-45423 bp Feature: gene Location: 45441-46727 bp Feature: domain Description: PRK10604 Location: 45444-46716 bp Feature: domain Description: PRK1 0604 Location: 45444-4671 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT clpP, tig (TIGR00115), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), OmpR (COG0745), PRK10604 (sensor protein RstB; Provisional)

Seq: KV798908.1 Pseudomonas sp. HMSC072F09 genomic scaffold Scaffold56, whole genome shotgun sequence (4200 bp)
Overview 1 RT 1: 65-3993 bp Neighborhood of RT #1 [65, 4022] NERD COG3177 RVT_N RVT-GII GIIM HNH Feature: gene Location: 65-400 bp Feature: domain Description: NERD Location: 164-335 bp Feature: domain Description: NERD Location: 164-335 bp Feature: gene Location: 493-1614 bp Feature: domain Description: COG3177 Location: 511-1603 bp Feature: domain Description: COG3177 Location: 511-1603 bp Feature: gene Location: 2337-4022 bp Feature: RT Description: RVT_N Location: 2394-2634 bp Feature: RT Description: RVT_N Location: 2 394-2 634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682-3318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 682 -3318 bp Feature: domain Description: GIIM Note: maturase Location: 3372-3603 bp Feature: domain Description: GIIM Note: maturase Location: 3372 -3603 bp Feature: domain Description: HNH Note: nucleases Location: 3855-3993 bp Feature: domain Description: HNH Note: nucleases Location: 3855-3993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: KV798888.1 Pseudomonas sp. HMSC072F09 genomic scaffold Scaffold26, whole genome shotgun sequence (108694 bp)
Overview 1 RT 1: 53095-58226 bp Neighborhood of RT #1 [53095, 58234] RpmB rpmG RVT_N RVT-GII YkfC HNHc COG3450 PRK13360 Feature: gene Location: 53095-53331 bp Feature: domain Description: RpmB Location: 53098-53320 bp Feature: domain Description: RpmB Location: 53 098-53 3 20 bp Feature: gene Location: 53343-53498 bp Feature: domain Description: rpmG Location: 53346-53490 bp Feature: domain Description: rpmG Location: 53 3 46-53 490 bp Feature: gene Location: 54560-56257 bp Feature: RT Description: RVT_N Location: 54617-54860 bp Feature: RT Description: RVT_N Location: 54617-54860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54905-55541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54905-55541 bp Feature: domain Description: YkfC Location: 55763-55898 bp Feature: domain Description: YkfC Location: 55763 -55898 bp Feature: domain Description: HNHc Note: nucleases Location: 56045-56210 bp Feature: domain Description: HNHc Note: nucleases Location: 56045-56210 bp Feature: gene Location: 56472-56834 bp Feature: domain Description: COG3450 Location: 56475-56820 bp Feature: domain Description: COG3 450 Location: 56475-56820 bp Feature: gene Location: 56900-58234 bp Feature: domain Description: PRK13360 Location: 56903-58226 bp Feature: domain Description: PRK13 3 60 Location: 56903 -58226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), rpmG (PRK00595), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional)