myRT

myRT report for GCA_001811315.1_ASM181131v1

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Seq: KV804410.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold499, whole genome shotgun sequence (143357 bp)
Overview 1 RT 1: 135715-143050 bp Neighborhood of RT #1 [135715, 143050] HTH_18 RVT-GII Intron_maturas2 HNHc INTN1_C_like Arm-DNA-bind_5 RVT-GII DUF4141 Feature: gene Location: 135715-136854 bp Ori: OFK94847.1 Feature: domain Description: HTH_18 Location: 136585-136825 bp Feature: domain Description: HTH_1 8 Location: 1 36585-1 36825 bp Feature: gene Location: 136965-137255 bp Feature: gene Location: 137754-138986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137757-138330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 37757-1 38330 bp Feature: domain Description: Intron_maturas2 Location: 138411-138708 bp Feature: domain Description: Intron_maturas2 Location: 1 3841 1 -1 38708 bp Feature: domain Description: HNHc Note: nucleases Location: 138882-138981 bp Feature: domain Description: HNHc Note: nucleases Location: 1 38882-1 38981 bp Feature: gene Location: 139610-140014 bp Ori: OFK94849.1 Feature: domain Description: INTN1_C_like Location: 139682-139991 bp Feature: domain Description: INTN1 _C_like Location: 1 39682-1 39991 bp Feature: gene Location: 140146-140631 bp Ori: OFK94850.1 Feature: domain Description: Arm-DNA-bind_5 Location: 140176-140422 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 401 76-1 40422 bp Feature: gene Location: 141221-141988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141485-141929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 485-1 41 929 bp Feature: gene Location: 142544-142744 bp Ori: OFK94851.1 Feature: domain Description: DUF4141 Location: 142550-142685 bp Feature: domain Description: DUF41 41 Location: 1 42550-1 42685 bp Feature: gene Location: 142775-143050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_18 (pfam12833), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), INTN1_C_like (cd01185), Arm-DNA-bind_5 (pfam17293), DUF4141 (pfam13605)

Seq: KV804412.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold501, whole genome shotgun sequence (370041 bp)
Overview 1 RT 1: 247996-251929 bp 2 RT 2: 337357-341378 bp Neighborhood of RT #1 [247996, 251929] RVT-UG27 Neighborhood of RT #2 [337357, 341392] WG_beta_rep RVT_N RVT-GII GIIM DUF4948 Imm17 Feature: gene Location: 247996-248475 bp Feature: gene Location: 248525-249022 bp Feature: gene Location: 249345-250607 bp Ori: OFK94310.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 249537-250173 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 2 49537-2 50173 bp Feature: gene Location: 250600-251268 bp Feature: gene Location: 251282-251929 bp Feature: gene Location: 337357-337707 bp Ori: OFK94395.1 Feature: domain Description: WG_beta_rep Location: 337501-337597 bp Feature: domain Description: WG_beta_rep Location: 337501-337597 bp Feature: gene Location: 337758-338153 bp Feature: gene Location: 338319-339809 bp Ori: OFK94397.1 Feature: domain Description: RVT_N Location: 338388-338631 bp Feature: domain Description: RVT_N Location: 338388-338631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338676-339321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338676-33932 1 bp Feature: domain Description: GIIM Note: maturase Location: 339375-339609 bp Feature: domain Description: GIIM Note: maturase Location: 339375-339609 bp Feature: gene Location: 340492-341100 bp Ori: OFK94423.1 Feature: domain Description: DUF4948 Location: 340579-341086 bp Feature: domain Description: DUF4948 Location: 340579-341086 bp Feature: gene Location: 341111-341392 bp Ori: OFK94422.1 Feature: domain Description: Imm17 Location: 341201-341378 bp Feature: domain Description: Imm17 Location: 3412 01-341378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27, WG_beta_rep (pfam14903), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4948 (pfam16306), Imm17 (pfam15562)

Seq: KV804463.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold738, whole genome shotgun sequence (2513 bp)
Overview 1 RT 1: 575-2357 bp Neighborhood of RT #1 [575, 2383] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 575-2383 bp Ori: OFK90736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 9-1661 bp Feature: domain Description: Intron_maturas2 Location: 1820-2042 bp Feature: domain Description: Intron_maturas2 Location: 1820-2042 bp Feature: domain Description: HNHc Note: nucleases Location: 2204-2357 bp Feature: domain Description: HNHc Note: nucleases Location: 2204-23 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KV804251.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold59, whole genome shotgun sequence (1971 bp)
Overview 1 RT 1: 190-1465 bp Neighborhood of RT #1 [190, 1842] RVT_N RVT-GII GIIM Feature: gene Location: 190-1842 bp Ori: OFK93215.1 Feature: domain Description: RVT_N Location: 244-487 bp Feature: domain Description: RVT_N Location: 24 4 -4 87 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532-1180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532-1180 bp Feature: domain Description: GIIM Note: maturase Location: 1234-1465 bp Feature: domain Description: GIIM Note: maturase Location: 1234 -14 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KV804319.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold248, whole genome shotgun sequence (63163 bp)
Overview 1 RT 1: 16827-26996 bp Neighborhood of RT #1 [16827, 27034] Laminin_G_3 pfam08757 LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 16827-23615 bp Ori: OFL01490.1 Feature: domain Description: Laminin_G_3 Location: 19263-19644 bp Feature: domain Description: Laminin_G_3 Location: 19263-19644 bp Feature: domain Description: pfam08757 Location: 20439-20763 bp Feature: domain Description: pfam0875 7 Location: 20439-20763 bp Feature: domain Description: LRR_AMN1 Location: 21411-21810 bp Feature: domain Description: LRR_AMN1 Location: 21411-21810 bp Feature: gene Location: 23810-23995 bp Feature: gene Location: 24049-25344 bp Ori: OFL01519.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24265-24856 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24265 -2485 6 bp Feature: gene Location: 25346-25840 bp Feature: gene Location: 25889-27034 bp Ori: OFL01493.1 Feature: domain Description: Arm-DNA-bind_5 Location: 25913-26159 bp Feature: domain Description: Arm-DNA-bind_5 Location: 25 913-2615 9 bp Feature: domain Description: Phage_int_SAM_5 Location: 26198-26483 bp Feature: domain Description: Phage_int_SAM_5 Location: 26198-26483 bp Feature: domain Description: INTN1_C_like Location: 26522-26996 bp Feature: domain Description: INTN1_C_like Location: 265 22-26996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: KV804356.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold343, whole genome shotgun sequence (17216 bp)
Overview 1 RT 1: 2910-12957 bp Neighborhood of RT #1 [2910, 12968] HTH_17 YhcG RVT-GII GIIM N6_Mtase COG4646 Helicase_C DUF1896 Feature: gene Location: 2910-3236 bp Ori: OFK98588.1 Feature: domain Description: HTH_17 Location: 3054-3186 bp Feature: domain Description: HTH_17 Location: 3054-3186 bp Feature: gene Location: 3373-4386 bp Ori: OFK98595.1 Feature: domain Description: YhcG Location: 3706-4189 bp Feature: domain Description: YhcG Location: 3706 -4189 bp Feature: gene Location: 4872-6278 bp Ori: OFK98589.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5214-5832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5214-5832 bp Feature: domain Description: GIIM Note: maturase Location: 5886-6090 bp Feature: domain Description: GIIM Note: maturase Location: 5886 -6 090 bp Feature: gene Location: 6371-12472 bp Ori: OFK98590.1 Feature: domain Description: N6_Mtase Location: 6662-7301 bp Feature: domain Description: N6 _Mtase Location: 6 6 6 2-7301 bp Feature: domain Description: COG4646 Location: 8888-10946 bp Feature: domain Description: COG46 46 Location: 8888-10946 bp Feature: domain Description: Helicase_C Location: 11144-11363 bp Feature: domain Description: Helicase_C Location: 11144-1136 3 bp Feature: gene Location: 12459-12968 bp Ori: OFK98591.1 Feature: domain Description: DUF1896 Location: 12549-12957 bp Feature: domain Description: DUF1896 Location: 12549-12957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), YhcG (COG4804), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), DUF1896 (pfam08989)

Seq: KV804276.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold115, whole genome shotgun sequence (49897 bp)
Overview 1 RT 1: 29078-37378 bp Neighborhood of RT #1 [29078, 37455] SMC_prok_B Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 Feature: gene Location: 29078-31588 bp Ori: OFL07228.1 Feature: domain Description: SMC_prok_B Location: 30596-30908 bp Feature: domain Description: SMC_prok_B Location: 30596-30908 bp Feature: gene Location: 31839-32384 bp Feature: domain Description: Bac_Flav_CT_G Location: 31857-32271 bp Feature: domain Description: Bac_Flav_CT_G Location: 31857 -3227 1 bp Feature: gene Location: 32462-34273 bp Ori: OFL07229.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32726-33548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327 26-33548 bp Feature: domain Description: Intron_maturas2 Location: 33623-33938 bp Feature: domain Description: Intron_maturas2 Location: 33623-33938 bp Feature: domain Description: HNHc Note: nucleases Location: 34094-34244 bp Feature: domain Description: HNHc Note: nucleases Location: 34094-34244 bp Feature: gene Location: 34820-37033 bp Ori: OFL07230.1 Feature: domain Description: Bac_Flav_CT_G Location: 34970-36479 bp Feature: domain Description: Bac_Flav_CT_G Location: 3497 0-3647 9 bp Feature: domain Description: Bac_Flav_CT_G Location: 36551-37019 bp Feature: domain Description: Bac_Flav_CT_G Location: 36551-37 019 bp Feature: gene Location: 37156-37455 bp Ori: OFL07231.1 Feature: domain Description: DUF4133 Location: 37198-37378 bp Feature: domain Description: DUF4133 Location: 37 198-37 37 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SMC_prok_B (TIGR02168), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: KV804336.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold290, whole genome shotgun sequence (228966 bp)
Overview 1 RT 1: 93647-98486 bp Neighborhood of RT #1 [93647, 98486] RVT-DGRs Feature: gene Location: 93647-94042 bp Feature: gene Location: 94064-94411 bp Feature: gene Location: 94792-95607 bp Ori: OFL00238.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95125-95449 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 95125-95449 bp Feature: gene Location: 96124-97443 bp Feature: gene Location: 97464-98486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: KV804323.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold257, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 579-2364 bp Neighborhood of RT #1 [579, 2402] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 579-2402 bp Ori: OFL01140.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 843-1665 bp Feature: domain Description: Intron_maturas2 Location: 1833-2079 bp Feature: domain Description: Intron_maturas2 Location: 1833-2079 bp Feature: domain Description: HNHc Note: nucleases Location: 2193-2364 bp Feature: domain Description: HNHc Note: nucleases Location: 219 3-2364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KV804482.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold811, whole genome shotgun sequence (173386 bp)
Overview 1 RT 1: 122328-135145 bp Neighborhood of RT #1 [122328, 135145] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 122328-124124 bp Ori: OFK89506.1 Feature: domain Description: rpsA Location: 122397-124008 bp Feature: domain Description: rpsA Location: 122397-124008 bp Feature: gene Location: 124293-130166 bp Ori: OFK89507.1 Feature: domain Description: DUF4011 Location: 125457-125967 bp Feature: domain Description: DUF4011 Location: 125457-125967 bp Feature: domain Description: DEXXQc_SF1 Location: 126306-126915 bp Feature: domain Description: DEXXQc_SF1 Location: 126306-126915 bp Feature: domain Description: DEXXQc_SF1 Location: 127578-128493 bp Feature: domain Description: DEXXQc_SF1 Location: 127578-128493 bp Feature: domain Description: KOG1803 Location: 128628-129006 bp Feature: domain Description: KOG1803 Location: 128628-129006 bp Feature: domain Description: MTES_1575 Location: 129165-129453 bp Feature: domain Description: MTES_1575 Location: 129165-129453 bp Feature: domain Description: DUF3320 Location: 129684-129804 bp Feature: domain Description: DUF3320 Location: 129684-129804 bp Feature: gene Location: 130208-131341 bp Ori: OFK89508.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130532-131078 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 130532-1310 78 bp Feature: gene Location: 131546-133705 bp Feature: gene Location: 134636-135145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: KV804269.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold102, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 83-1238 bp Neighborhood of RT #1 [83, 1348] RVT-GII GIIM Feature: gene Location: 83-1348 bp Ori: OFL07873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293-950 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1238 bp Feature: domain Description: GIIM Note: maturase Location: 1031-1238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: KV804347.1 Bacteroides sp. HMSC067B03 genomic scaffold Scaffold316, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 122-1913 bp Neighborhood of RT #1 [122, 1939] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 122-1939 bp Ori: OFK99309.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-1211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 389-12 11 bp Feature: domain Description: Intron_maturas2 Location: 1316-1589 bp Feature: domain Description: Intron_maturas2 Location: 1316-1589 bp Feature: domain Description: HNHc Note: nucleases Location: 1760-1913 bp Feature: domain Description: HNHc Note: nucleases Location: 1760-1913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)