myRT

myRT report for GCA_001811395.1_ASM181139v1

Download annotations/find similar RTs

Seq: KV804672.1 Anaerosphaera sp. HMSC064C01 genomic scaffold Scaffold121, whole genome shotgun sequence (192777 bp)
Overview 1 RT 1: 75440-83299 bp Neighborhood of RT #1 [75440, 83299] RE_HpaII dcm RVT-Retrons guaA Feature: gene Location: 75440-76522 bp Feature: domain Description: RE_HpaII Location: 75455-76517 bp Feature: domain Description: RE_HpaII Location: 75455-7651 7 bp Feature: gene Location: 76526-77569 bp Feature: domain Description: dcm Location: 76541-77486 bp Feature: domain Description: dcm Location: 76541 -77486 bp Feature: gene Location: 77731-79407 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77851-78451 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77851 -78451 bp Feature: gene Location: 79562-81097 bp Feature: domain Description: guaA Location: 79568-81095 bp Feature: domain Description: guaA Location: 79568-81 095 bp Feature: gene Location: 81242-83299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RE_HpaII (pfam09561), dcm (TIGR00675), RVT-Retrons, guaA (PRK00074)

Seq: KV804669.1 Anaerosphaera sp. HMSC064C01 genomic scaffold Scaffold75, whole genome shotgun sequence (201920 bp)
Overview 1 RT 1: 119314-132147 bp 2 RT 2: 142304-146857 bp Neighborhood of RT #1 [119314, 132185] SSB_OBF RVT_N RVT-GII GIIM PHA03411 COG4646 COG4646 HELICc DUF1016_N YhcG_C Neighborhood of RT #2 [142304, 146877] SSB_OBF RVT-GII GIIM VirD4 DUF3801 Feature: gene Location: 119314-119973 bp Feature: domain Description: SSB_OBF Location: 119569-119839 bp Feature: domain Description: SSB_OBF Location: 119569-119839 bp Feature: gene Location: 120014-121363 bp Feature: gene Location: 121497-123167 bp Feature: RT Description: RVT_N Location: 121542-121785 bp Feature: RT Description: RVT_N Location: 12 1542 -12 1785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121830-122478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 1830-12 2 478 bp Feature: domain Description: GIIM Note: maturase Location: 122532-122763 bp Feature: domain Description: GIIM Note: maturase Location: 12 2 532 -12 2 763 bp Feature: gene Location: 123723-131072 bp Feature: domain Description: PHA03411 Location: 127245-127551 bp Feature: domain Description: PHA03411 Location: 12 72 45-12 7551 bp Feature: domain Description: COG4646 Location: 127866-128601 bp Feature: domain Description: COG4646 Location: 12 7866-12 8601 bp Feature: domain Description: COG4646 Location: 128868-130578 bp Feature: domain Description: COG4646 Location: 12 8868-130578 bp Feature: domain Description: HELICc Location: 130629-130995 bp Feature: domain Description: HELICc Location: 13062 9-130995 bp Feature: gene Location: 131154-132185 bp Feature: domain Description: DUF1016_N Location: 131220-131628 bp Feature: domain Description: DUF1016_N Location: 1312 2 0-13162 8 bp Feature: domain Description: YhcG_C Location: 131694-132147 bp Feature: domain Description: YhcG_C Location: 131694-132 147 bp Feature: gene Location: 142304-142615 bp Feature: domain Description: SSB_OBF Location: 142388-142574 bp Feature: domain Description: SSB_OBF Location: 142 388-142 574 bp Feature: gene Location: 142615-142728 bp Feature: gene Location: 142815-144068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143019-143634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 143019-143634 bp Feature: domain Description: GIIM Note: maturase Location: 143688-143919 bp Feature: domain Description: GIIM Note: maturase Location: 143688-143919 bp Feature: gene Location: 144611-146395 bp Feature: domain Description: VirD4 Location: 144854-146291 bp Feature: domain Description: VirD4 Location: 144854-1462 91 bp Feature: gene Location: 146392-146877 bp Feature: domain Description: DUF3801 Location: 146458-146857 bp Feature: domain Description: DUF3801 Location: 146458-146857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSB_OBF (cd04496), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), DUF1016_N (pfam17761), YhcG_C, VirD4 (COG3505)
DUF3801 (pfam12687)