myRT

myRT report for GCA_001813025.1_ASM181302v1

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Seq: KV811295.1 Pseudomonas sp. HMSC066A08 genomic scaffold Scaffold554, whole genome shotgun sequence (185520 bp)
Overview 1 RT 1: 49372-58242 bp Neighborhood of RT #1 [49372, 58250] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Feature: gene Location: 49372-50046 bp Ori: OFR49761.1 Feature: domain Description: NTP_transferase_like_1 Location: 49378-50017 bp Feature: domain Description: NTP_transferase_like_1 Location: 49378-5001 7 bp Feature: gene Location: 50043-51059 bp Ori: OFR49762.1 Feature: domain Description: COG3178 Location: 50046-51045 bp Feature: domain Description: COG31 78 Location: 50046-51 045 bp Feature: gene Location: 52331-54043 bp Ori: OFR49763.1 Feature: domain Description: RVT_N Location: 52388-52631 bp Feature: domain Description: RVT_N Location: 52388-52631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52676-53312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52676-5331 2 bp Feature: domain Description: YkfC Location: 53522-53672 bp Feature: domain Description: YkfC Location: 53522-53672 bp Feature: domain Description: HNH Note: nucleases Location: 53849-53987 bp Feature: domain Description: HNH Note: nucleases Location: 53849-53987 bp Feature: gene Location: 54176-56977 bp Ori: OFR49764.1 Feature: domain Description: LptD Location: 54371-56963 bp Feature: domain Description: LptD Location: 54371 -56963 bp Feature: gene Location: 56958-58250 bp Ori: OFR49765.1 Feature: domain Description: PRK10770 Location: 57048-58242 bp Feature: domain Description: PRK1 0770 Location: 57048-58242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)

Seq: KV811293.1 Pseudomonas sp. HMSC066A08 genomic scaffold Scaffold548, whole genome shotgun sequence (91021 bp)
Overview 1 RT 1: 51510-57782 bp Neighborhood of RT #1 [51510, 57796] RVT-G2L4 DUF4354 sensory_box PAS Tar Feature: gene Location: 51510-51863 bp Feature: gene Location: 52453-53190 bp Feature: gene Location: 53264-54499 bp Ori: OFR50140.1 Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 53477-54068 bp Feature: RT Description: RVT-G2 L4 Note: G2 L4 RT Location: 53477-54068 bp Feature: gene Location: 55716-56096 bp Ori: OFR50034.1 Feature: domain Description: DUF4354 Location: 55719-56085 bp Feature: domain Description: DUF4354 Location: 55719-56085 bp Feature: gene Location: 56501-57796 bp Ori: OFR50035.1 Feature: domain Description: sensory_box Location: 56591-56903 bp Feature: domain Description: sensory_box Location: 56591-56903 bp Feature: domain Description: PAS Location: 56924-57080 bp Feature: domain Description: PAS Location: 5692 4-57080 bp Feature: domain Description: Tar Location: 57239-57782 bp Feature: domain Description: Tar Location: 572 39-57782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4, DUF4354 (pfam14263), sensory_box (TIGR00229), PAS (smart00091), Tar (COG0840)

Seq: KV811339.1 Pseudomonas sp. HMSC066A08 genomic scaffold Scaffold744, whole genome shotgun sequence (43202 bp)
Overview 1 RT 1: 4772-11479 bp Neighborhood of RT #1 [4772, 11479] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM Feature: gene Location: 4772-5110 bp Ori: OFR45589.1 Feature: domain Description: TnpB_IS66 Location: 4790-5081 bp Feature: domain Description: TnpB_IS66 Location: 4790-5081 bp Feature: gene Location: 5174-6517 bp Ori: OFR45590.1 Feature: domain Description: LZ_Tnp_IS66 Location: 5318-5525 bp Feature: domain Description: LZ_Tnp_IS66 Location: 53 18-5525 bp Feature: domain Description: zf-IS66 Location: 5549-5678 bp Feature: domain Description: zf-IS66 Location: 5549-5678 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5723-6497 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5723 -6497 bp Feature: gene Location: 7073-8746 bp Ori: OFR45591.1 Feature: domain Description: RVT_N Location: 7118-7361 bp Feature: domain Description: RVT_N Location: 7118-73 61 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7406-8042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7406-8042 bp Feature: domain Description: GIIM Note: maturase Location: 8096-8327 bp Feature: domain Description: GIIM Note: maturase Location: 8096-83 27 bp Feature: gene Location: 9086-9664 bp Feature: gene Location: 9767-11479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)