myRT

myRT report for GCA_001814465.1_ASM181446v1

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Seq: KV816664.1 Enterococcus sp. HMSC060E05 genomic scaffold Scaffold13, whole genome shotgun sequence (3287 bp)
Overview 1 RT 1: 1-2542 bp Neighborhood of RT #1 [1, 3204] HsdM RVT-AbiP2 Feature: gene Location: 1-1478 bp Ori: OFP81776.1 Feature: domain Description: HsdM Location: 22-1447 bp Feature: domain Description: HsdM Location: 22-1 447 bp Feature: gene Location: 1816-3204 bp Ori: OFP81777.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2077-2542 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2077-2542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM (COG0286), RVT-AbiP2

Seq: KV816774.1 Enterococcus sp. HMSC060E05 genomic scaffold Scaffold229, whole genome shotgun sequence (31525 bp)
Overview 1 RT 1: 18816-24656 bp Neighborhood of RT #1 [18816, 24661] VirB4 RVT-GII HNHc MazE Feature: gene Location: 18816-19409 bp Feature: gene Location: 19572-21266 bp Ori: OFP78778.1 Feature: domain Description: VirB4 Location: 19890-20574 bp Feature: domain Description: VirB4 Location: 19890-2 0574 bp Feature: gene Location: 21954-23831 bp Ori: OFP78779.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22269-23007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 2 69-2 3007 bp Feature: domain Description: HNHc Note: nucleases Location: 23565-23718 bp Feature: domain Description: HNHc Note: nucleases Location: 2 3565-2 3718 bp Feature: gene Location: 24019-24339 bp Feature: gene Location: 24398-24661 bp Ori: OFP78781.1 Feature: domain Description: MazE Location: 24419-24656 bp Feature: domain Description: MazE Location: 2 4419-2 4656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), MazE (COG2336)

Seq: KV816703.1 Enterococcus sp. HMSC060E05 genomic scaffold Scaffold87, whole genome shotgun sequence (38705 bp)
Overview 1 RT 1: 17838-23583 bp Neighborhood of RT #1 [17838, 23654] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE Feature: gene Location: 17838-18128 bp Feature: gene Location: 18387-19571 bp Ori: OFP72543.1 Feature: domain Description: HTH_XRE Location: 18417-18561 bp Feature: domain Description: HTH_XRE Location: 18417-18561 bp Feature: domain Description: Rol_Rep_N Location: 18594-18858 bp Feature: domain Description: Rol_Rep_N Location: 18594-18858 bp Feature: domain Description: Rep_trans Location: 18882-19494 bp Feature: domain Description: Rep_trans Location: 18882-19494 bp Feature: gene Location: 20451-22361 bp Ori: OFP72544.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20784-21522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20784-21522 bp Feature: domain Description: HNHc Note: nucleases Location: 22077-22242 bp Feature: domain Description: HNHc Note: nucleases Location: 22077-22242 bp Feature: gene Location: 22702-23205 bp Ori: OFP72545.1 Feature: domain Description: ArdA Location: 22720-23191 bp Feature: domain Description: ArdA Location: 22720-23 191 bp Feature: gene Location: 23265-23654 bp Ori: OFP72546.1 Feature: domain Description: TcpE Location: 23283-23583 bp Feature: domain Description: TcpE Location: 23 283 -23 583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275), TcpE (pfam12648)