myRT

myRT report for GCA_001814685.1_ASM181468v1

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Seq: KV817484.1 Prevotella sp. HMSC077E09 genomic scaffold Scaffold12, whole genome shotgun sequence (66156 bp)
Overview 1 RT 1: 44938-53981 bp Neighborhood of RT #1 [44938, 55105] HTH_17 HTH_17 RVT-UG8 DUF2326 COG4646 HELICc Feature: gene Location: 44938-45240 bp Ori: OFP61346.1 Feature: domain Description: HTH_17 Location: 45067-45214 bp Feature: domain Description: HTH_1 7 Location: 45067-4521 4 bp Feature: gene Location: 45278-45556 bp Ori: OFP61347.1 Feature: domain Description: HTH_17 Location: 45398-45542 bp Feature: domain Description: HTH_1 7 Location: 45398-45542 bp Feature: gene Location: 46078-48267 bp Ori: OFP61348.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46699-47152 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46699-471 52 bp Feature: gene Location: 48397-49560 bp Ori: OFP61349.1 Feature: domain Description: DUF2326 Location: 49177-49555 bp Feature: domain Description: DUF2326 Location: 491 77-49555 bp Feature: gene Location: 49628-55105 bp Ori: OFP61350.1 Feature: domain Description: COG4646 Location: 51311-53567 bp Feature: domain Description: COG4646 Location: 51 31 1 -53567 bp Feature: domain Description: HELICc Location: 53615-53981 bp Feature: domain Description: HELICc Location: 5361 5-53981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG8, DUF2326 (pfam10088), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490)

Seq: KV817487.1 Prevotella sp. HMSC077E09 genomic scaffold Scaffold26, whole genome shotgun sequence (7971 bp)
Overview 1 RT 1: 2771-7972 bp Neighborhood of RT #1 [2771, 7971] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 2771-3403 bp Ori: OFP58916.1 Feature: domain Description: DUF4141 Location: 2789-2942 bp Feature: domain Description: DUF4141 Location: 2 789-2 942 bp Feature: gene Location: 3626-4090 bp Ori: OFP58917.1 Feature: domain Description: Bac_Flav_CT_G Location: 3644-4070 bp Feature: domain Description: Bac_Flav_CT_G Location: 3644-4070 bp Feature: gene Location: 4168-5979 bp Ori: OFP58918.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4432-5254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4432 -52 54 bp Feature: domain Description: Intron_maturas2 Location: 5338-5656 bp Feature: domain Description: Intron_maturas2 Location: 5338-5656 bp Feature: domain Description: HNHc Note: nucleases Location: 5800-5950 bp Feature: domain Description: HNHc Note: nucleases Location: 5800-5950 bp Feature: gene Location: 6556-7971 bp Feature: domain Description: Bac_Flav_CT_G Location: 6559-7972 bp Feature: domain Description: Bac_Flav_CT_G Location: 6559-7972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: KV817552.1 Prevotella sp. HMSC077E09 genomic scaffold Scaffold279, whole genome shotgun sequence (15474 bp)
Overview 1 RT 1: 7319-14119 bp Neighborhood of RT #1 [7319, 14119] RVT-UG8 RVT-UG8 RVT-UG3 Feature: gene Location: 7319-7543 bp Feature: gene Location: 8041-9051 bp Feature: gene Location: 9167-11263 bp Ori: OFP58504.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9704-9890 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9704-9890 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9929-10193 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9929-10193 bp Feature: gene Location: 11244-12650 bp Ori: OFP58505.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 11625-12132 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 11625-1213 2 bp Feature: gene Location: 13092-13424 bp Feature: gene Location: 13781-14119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3

Seq: KV817538.1 Prevotella sp. HMSC077E09 genomic scaffold Scaffold219, whole genome shotgun sequence (16050 bp)
Overview 1 RT 1: 1-2958 bp Neighborhood of RT #1 [1, 2957] DUF4133 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 1-239 bp Ori: OFP59780.1 Feature: domain Description: DUF4133 Location: 19-238 bp Feature: domain Description: DUF4 133 Location: 19-238 bp Feature: gene Location: 462-2129 bp Feature: domain Description: RVT_N Location: 519-762 bp Feature: domain Description: RVT_N Location: 519-762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-1455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807-14 55 bp Feature: domain Description: GIIM Note: maturase Location: 1512-1743 bp Feature: domain Description: GIIM Note: maturase Location: 1512-174 3 bp Feature: gene Location: 2423-2656 bp Feature: gene Location: 2760-2957 bp Feature: domain Description: DUF4134 Location: 2784-2958 bp Feature: domain Description: DUF4 134 Location: 2784 -2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572)