myRT

myRT report for GCA_001814855.1_ASM181485v1

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Seq: KV818112.1 Prevotella sp. HMSC069G02 genomic scaffold Scaffold63, whole genome shotgun sequence (20279 bp)
Overview 1 RT 1: 1-7147 bp Neighborhood of RT #1 [1, 7379] RVT-GII DDE_Tnp_1_4 RVT-GII GIIM DUF4372 DDE_Tnp_1 Feature: gene Location: 1-401 bp Feature: gene Location: 502-685 bp Feature: gene Location: 1204-1713 bp Ori: OFP32530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1546-1621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 546-1 621 bp Feature: gene Location: 2508-3836 bp Ori: OFP32531.1 Feature: domain Description: DDE_Tnp_1_4 Location: 2526-3804 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 2526-3804 bp Feature: gene Location: 5069-6349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5273-5885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5273-5885 bp Feature: domain Description: GIIM Note: maturase Location: 5945-6176 bp Feature: domain Description: GIIM Note: maturase Location: 5945-61 76 bp Feature: gene Location: 6474-6765 bp Feature: domain Description: DUF4372 Location: 6498-6696 bp Feature: domain Description: DUF4372 Location: 6498-6696 bp Feature: gene Location: 6880-7379 bp Feature: domain Description: DDE_Tnp_1 Location: 6883-7147 bp Feature: domain Description: DDE_Tnp_1 Location: 6883-71 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_1_4 (pfam13701), GIIM (pfam08388), DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)

Seq: KV818202.1 Prevotella sp. HMSC069G02 genomic scaffold Scaffold372, whole genome shotgun sequence (109946 bp)
Overview 1 RT 1: 97192-104508 bp Neighborhood of RT #1 [97192, 104549] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons Mob_Pre dnaG Toprim_2 Feature: gene Location: 97192-98415 bp Ori: OFP36506.1 Feature: domain Description: Arm-DNA-bind_5 Location: 97228-97504 bp Feature: domain Description: Arm-DNA-bind_5 Location: 972 2 8-97504 bp Feature: domain Description: Phage_int_SAM_5 Location: 97558-97840 bp Feature: domain Description: Phage_int_SAM_5 Location: 97558-97840 bp Feature: domain Description: INTN1_C_like Location: 97897-98371 bp Feature: domain Description: INTN1_C_like Location: 97897-98371 bp Feature: gene Location: 99163-100377 bp Feature: gene Location: 100571-101665 bp Ori: OFP36508.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100790-101414 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100790-101414 bp Feature: gene Location: 102101-103417 bp Ori: OFP36509.1 Feature: domain Description: Mob_Pre Location: 102104-102734 bp Feature: domain Description: Mob_Pre Location: 102 104-102 734 bp Feature: gene Location: 103659-104549 bp Ori: OFP36510.1 Feature: domain Description: dnaG Location: 103728-103860 bp Feature: domain Description: dnaG Location: 10372 8-103860 bp Feature: domain Description: Toprim_2 Location: 104238-104508 bp Feature: domain Description: Toprim_2 Location: 1042 38-104508 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, Mob_Pre (pfam01076), dnaG (TIGR01391), Toprim_2 (pfam13155)