myRT

myRT report for GCA_001815255.1_ASM181525v1

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Seq: KV820002.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold117, whole genome shotgun sequence (139256 bp)
Overview 1 RT 1: 70841-83380 bp Neighborhood of RT #1 [70841, 83380] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 70841-72643 bp Feature: domain Description: rpsA Location: 70910-72527 bp Feature: domain Description: rpsA Location: 7091 0-72527 bp Feature: gene Location: 72740-78697 bp Feature: domain Description: DUF4011 Location: 73970-74483 bp Feature: domain Description: DUF401 1 Location: 73970-74483 bp Feature: domain Description: DEXXQc_SF1 Location: 74822-75683 bp Feature: domain Description: DEXXQc_SF1 Location: 74822-75683 bp Feature: domain Description: DEXXQc_SF1 Location: 76250-77009 bp Feature: domain Description: DEXXQc_SF1 Location: 76250-77009 bp Feature: domain Description: TIGR00376 Location: 77141-77528 bp Feature: domain Description: TIGR00376 Location: 771 41 -77528 bp Feature: domain Description: MTES_1575 Location: 77681-77966 bp Feature: domain Description: MTES_1 575 Location: 77681 -77966 bp Feature: domain Description: DUF3320 Location: 78206-78347 bp Feature: domain Description: DUF3320 Location: 78206-78347 bp Feature: gene Location: 78699-79829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79020-79563 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79020-79563 bp Feature: gene Location: 80034-82241 bp Feature: gene Location: 82907-83380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: KV820024.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold227, whole genome shotgun sequence (146069 bp)
Overview 1 RT 1: 550-8960 bp Neighborhood of RT #1 [550, 10756] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 550-1695 bp Feature: domain Description: Arm-DNA-bind_5 Location: 574-820 bp Feature: domain Description: Arm-DNA-bind_5 Location: 574-82 0 bp Feature: domain Description: Phage_int_SAM_5 Location: 859-1144 bp Feature: domain Description: Phage_int_SAM_5 Location: 859-1144 bp Feature: domain Description: INTN1_C_like Location: 1183-1657 bp Feature: domain Description: INTN1_C_like Location: 1183-1657 bp Feature: gene Location: 1744-2238 bp Feature: gene Location: 2240-3535 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2456-3047 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 456-3047 bp Feature: gene Location: 3589-3774 bp Feature: gene Location: 3968-10756 bp Feature: domain Description: Laminin_G_3 Location: 6404-6785 bp Feature: domain Description: Laminin_G_3 Location: 6404-6785 bp Feature: domain Description: pfam08757 Location: 7580-7904 bp Feature: domain Description: pfam08757 Location: 7580-7904 bp Feature: domain Description: LRR_AMN1 Location: 8516-8960 bp Feature: domain Description: LRR_AMN1 Location: 8516-8960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: KV819962.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold37, whole genome shotgun sequence (95244 bp)
Overview 1 RT 1: 61264-66446 bp Neighborhood of RT #1 [61264, 66907] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 61264-61434 bp Feature: domain Description: DUF3875 Location: 61273-61429 bp Feature: domain Description: DUF3 875 Location: 61273 -61429 bp Feature: gene Location: 61531-63330 bp Feature: domain Description: Bac_Flav_CT_G Location: 61534-63331 bp Feature: domain Description: Bac_Flav_CT_G Location: 6153 4-63 3 3 1 bp Feature: gene Location: 63907-65718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64171-64993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64171-64993 bp Feature: domain Description: Intron_maturas2 Location: 65068-65383 bp Feature: domain Description: Intron_maturas2 Location: 65068-653 83 bp Feature: domain Description: HNHc Note: nucleases Location: 65539-65689 bp Feature: domain Description: HNHc Note: nucleases Location: 6553 9-65689 bp Feature: gene Location: 65796-66254 bp Feature: domain Description: Bac_Flav_CT_G Location: 65814-66240 bp Feature: domain Description: Bac_Flav_CT_G Location: 65814-66240 bp Feature: gene Location: 66275-66907 bp Feature: domain Description: DUF4141 Location: 66299-66446 bp Feature: domain Description: DUF4141 Location: 66299-66446 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: KV819977.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold64, whole genome shotgun sequence (161369 bp)
Overview 1 RT 1: 43419-53568 bp Neighborhood of RT #1 [43419, 53579] YhcG Spc7 Spc7 RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Feature: gene Location: 43419-44432 bp Feature: domain Description: YhcG Location: 43752-44235 bp Feature: domain Description: YhcG Location: 4 3752-4 4 235 bp Feature: gene Location: 44496-45770 bp Feature: domain Description: Spc7 Location: 44886-45081 bp Feature: domain Description: Spc7 Location: 4 4 886-4 5081 bp Feature: domain Description: Spc7 Location: 45378-45618 bp Feature: domain Description: Spc7 Location: 4 5378-4 5618 bp Feature: gene Location: 45772-47439 bp Feature: RT Description: RVT_N Location: 45826-46069 bp Feature: RT Description: RVT_N Location: 4 5826-4 6069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46114-46762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6114 -4 6762 bp Feature: domain Description: GIIM Note: maturase Location: 46816-47047 bp Feature: domain Description: GIIM Note: maturase Location: 4 6816-4 704 7 bp Feature: gene Location: 48119-53083 bp Feature: domain Description: N6_Mtase Location: 48410-49049 bp Feature: domain Description: N6_Mtase Location: 4 84 10-4 904 9 bp Feature: domain Description: COG4646 Location: 50657-52715 bp Feature: domain Description: COG4 64 6 Location: 50657-52715 bp Feature: gene Location: 53070-53579 bp Feature: domain Description: DUF1896 Location: 53160-53568 bp Feature: domain Description: DUF1896 Location: 53160-53568 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), Spc7 (smart00787), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), DUF1896 (pfam08989)

Seq: KV820022.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold224, whole genome shotgun sequence (188131 bp)
Overview 1 RT 1: 102496-106700 bp Neighborhood of RT #1 [102496, 106700] YWFCY RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 102496-102621 bp Feature: domain Description: YWFCY Location: 102502-102616 bp Feature: domain Description: YWFCY Location: 1025 02-102616 bp Feature: gene Location: 102668-103540 bp Feature: gene Location: 103733-105538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103997-104819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103997-104819 bp Feature: domain Description: Intron_maturas2 Location: 104897-105203 bp Feature: domain Description: Intron_maturas2 Location: 104897-105 203 bp Feature: domain Description: HNHc Note: nucleases Location: 105365-105509 bp Feature: domain Description: HNHc Note: nucleases Location: 105 365 -105 5 09 bp Feature: gene Location: 106091-106342 bp Feature: domain Description: Relaxase Location: 106121-106334 bp Feature: domain Description: Relaxase Location: 106121-106334 bp Feature: gene Location: 106455-106700 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: KV819999.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold102, whole genome shotgun sequence (2436 bp)
Overview 1 RT 1: 655-1930 bp Neighborhood of RT #1 [655, 2307] RVT_N RVT-GII GIIM Feature: gene Location: 655-2307 bp Feature: RT Description: RVT_N Location: 709-952 bp Feature: RT Description: RVT_N Location: 709-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-16 45 bp Feature: domain Description: GIIM Note: maturase Location: 1699-1930 bp Feature: domain Description: GIIM Note: maturase Location: 16 99-1930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KV820052.1 Bacteroides sp. HMSC073E02 genomic scaffold Scaffold465, whole genome shotgun sequence (313767 bp)
Overview 1 RT 1: 133865-138247 bp Neighborhood of RT #1 [133865, 138267] Avd_like RVT-DGRs YbdN Feature: gene Location: 133865-134347 bp Feature: gene Location: 134365-134736 bp Feature: domain Description: Avd_like Location: 134392-134695 bp Feature: domain Description: Avd_like Location: 134392-134695 bp Feature: gene Location: 135497-136516 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 135500-136127 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 135500-136127 bp Feature: gene Location: 136531-136986 bp Feature: gene Location: 136993-138267 bp Feature: domain Description: YbdN Location: 137008-138247 bp Feature: domain Description: YbdN Location: 137 008-138247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, YbdN (COG3969)