myRT

myRT report for GCA_001815315.1_ASM181531v1

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Seq: KV820181.1 Prevotella sp. HMSC077E08 genomic scaffold Scaffold207, whole genome shotgun sequence (15297 bp)
Overview 1 RT 1: 7275-13966 bp Neighborhood of RT #1 [7275, 13966] RVT-UG8 RVT-UG8 RVT-UG3 Feature: gene Location: 7275-7499 bp Feature: gene Location: 7997-9007 bp Feature: gene Location: 9123-11219 bp Ori: OFO81986.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9660-9846 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9660-9846 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9885-10149 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9885-1 01 49 bp Feature: gene Location: 11200-12606 bp Ori: OFO81987.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 11581-12088 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 1 581 -1 2088 bp Feature: gene Location: 13048-13380 bp Feature: gene Location: 13737-13966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG8, RVT-UG3

Seq: KV820146.1 Prevotella sp. HMSC077E08 genomic scaffold Scaffold44, whole genome shotgun sequence (7627 bp)
Overview 1 RT 1: 1-4398 bp Neighborhood of RT #1 [1, 4859] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 1-1074 bp Feature: domain Description: Bac_Flav_CT_G Location: 7-1075 bp Feature: domain Description: Bac_Flav_CT_G Location: 7-1075 bp Feature: gene Location: 1651-3462 bp Ori: OFO77551.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915-2737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915-2 737 bp Feature: domain Description: Intron_maturas2 Location: 2821-3139 bp Feature: domain Description: Intron_maturas2 Location: 2 82 1-3139 bp Feature: domain Description: HNHc Note: nucleases Location: 3283-3433 bp Feature: domain Description: HNHc Note: nucleases Location: 32 83-3433 bp Feature: gene Location: 3540-4004 bp Ori: OFO77552.1 Feature: domain Description: Bac_Flav_CT_G Location: 3558-3984 bp Feature: domain Description: Bac_Flav_CT_G Location: 3558-3984 bp Feature: gene Location: 4227-4859 bp Ori: OFO77553.1 Feature: domain Description: DUF4141 Location: 4245-4398 bp Feature: domain Description: DUF4141 Location: 42 45-4398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: KV820249.1 Prevotella sp. HMSC077E08 genomic scaffold Scaffold631, whole genome shotgun sequence (15734 bp)
Overview 1 RT 1: 13092-15201 bp Neighborhood of RT #1 [13092, 15587] DUF4134 RVT_N RVT-GII GIIM Feature: gene Location: 13092-13289 bp Feature: domain Description: DUF4134 Location: 13116-13290 bp Feature: domain Description: DUF413 4 Location: 13 116-13 290 bp Feature: gene Location: 13393-13626 bp Feature: gene Location: 13920-15587 bp Feature: domain Description: RVT_N Location: 13977-14220 bp Feature: domain Description: RVT_N Location: 13 977-14220 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14265-14913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14265-14913 bp Feature: domain Description: GIIM Note: maturase Location: 14970-15201 bp Feature: domain Description: GIIM Note: maturase Location: 14970-15201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: KV820149.1 Prevotella sp. HMSC077E08 genomic scaffold Scaffold56, whole genome shotgun sequence (66152 bp)
Overview 1 RT 1: 44936-53979 bp Neighborhood of RT #1 [44936, 55103] HTH_17 HTH_17 RVT-UG8 DUF2326 COG4646 HELICc Feature: gene Location: 44936-45238 bp Ori: OFO73638.1 Feature: domain Description: HTH_17 Location: 45065-45212 bp Feature: domain Description: HTH_17 Location: 4 5065-4 5212 bp Feature: gene Location: 45276-45554 bp Ori: OFO73647.1 Feature: domain Description: HTH_17 Location: 45396-45540 bp Feature: domain Description: HTH_17 Location: 4 5396-4 554 0 bp Feature: gene Location: 46076-48265 bp Ori: OFO73639.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46697-47150 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 4 6697-4 7150 bp Feature: gene Location: 48395-49558 bp Ori: OFO73640.1 Feature: domain Description: DUF2326 Location: 49175-49553 bp Feature: domain Description: DUF2326 Location: 4 9175-4 9553 bp Feature: gene Location: 49626-55103 bp Ori: OFO73641.1 Feature: domain Description: COG4646 Location: 51309-53565 bp Feature: domain Description: COG4 64 6 Location: 51309-53565 bp Feature: domain Description: HELICc Location: 53613-53979 bp Feature: domain Description: HELICc Location: 53613-53979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-UG8, DUF2326 (pfam10088), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490)