myRT

myRT report for GCA_001816225.2_ASM181622v2

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Seq: MKXL02000072.1 Bacteroides fragilis strain 14-106904-1 14-106904-1_S15_L001_R1_001_15_P_trim_contig_72, whole genome shotgun sequence (5714 bp)
Overview 1 RT 1: 207-5670 bp Neighborhood of RT #1 [207, 5714] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Feature: gene Location: 207-590 bp Ori: PLS62985.1 Feature: domain Description: DUF3876 Location: 288-552 bp Feature: domain Description: DUF3876 Location: 288-552 bp Feature: gene Location: 628-2343 bp Ori: PLS62981.1 Feature: domain Description: Bac_Flav_CT_G Location: 760-2326 bp Feature: domain Description: Bac_Flav_CT_G Location: 760-2326 bp Feature: gene Location: 2328-4037 bp Ori: PLS62982.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2430-2673 bp Feature: domain Description: RVT_N Location: 2430-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2718-3366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 8-3366 bp Feature: domain Description: GIIM Note: maturase Location: 3420-3651 bp Feature: domain Description: GIIM Note: maturase Location: 3420-3651 bp Feature: gene Location: 4591-5511 bp Feature: domain Description: Bac_Flav_CT_G Location: 4594-5512 bp Feature: domain Description: Bac_Flav_CT_G Location: 4594-551 2 bp Feature: gene Location: 5508-5714 bp Ori: PLS62983.1 Feature: domain Description: DUF4133 Location: 5511-5670 bp Feature: domain Description: DUF41 33 Location: 551 1 -5670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: MKXL02000020.1 Bacteroides fragilis strain 14-106904-1 14-106904-1_S15_L001_R1_001_15_P_trim_contig_20, whole genome shotgun sequence (290473 bp)
Overview 1 RT 1: 64031-72997 bp Neighborhood of RT #1 [64031, 72999] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 64031-64945 bp Ori: PLS65489.1 Feature: domain Description: RNase_Z Location: 64046-64937 bp Feature: domain Description: RNase_Z Location: 64046-64937 bp Feature: gene Location: 65096-66889 bp Ori: PLS65490.1 Feature: domain Description: rpsA Location: 65174-66782 bp Feature: domain Description: rpsA Location: 65174-66782 bp Feature: gene Location: 67031-68143 bp Ori: PLS65491.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67346-67895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 67346-67895 bp Feature: gene Location: 68350-70569 bp Feature: gene Location: 70810-72999 bp Ori: PLS65493.1 Feature: domain Description: GlnA3 Location: 70885-72997 bp Feature: domain Description: GlnA3 Location: 70885-72 997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: MKXL02000055.1 Bacteroides fragilis strain 14-106904-1 14-106904-1_S15_L001_R1_001_15_P_trim_contig_55, whole genome shotgun sequence (9403 bp)
Overview 1 RT 1: 1423-5527 bp Neighborhood of RT #1 [1423, 5547] TraO Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Feature: gene Location: 1423-1998 bp Ori: PLS63353.1 Feature: domain Description: TraO Location: 1498-1993 bp Feature: domain Description: TraO Location: 1498-1993 bp Feature: gene Location: 2001-2726 bp Ori: PLS63354.1 Gene: traN Feature: domain Description: Bac_Flav_CT_N Location: 2145-2706 bp Feature: domain Description: Bac_Flav_CT_N Location: 2145-2706 bp Feature: gene Location: 2698-4509 bp Ori: PLS63355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2962-3784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2962-3 784 bp Feature: domain Description: Intron_maturas2 Location: 3853-4162 bp Feature: domain Description: Intron_maturas2 Location: 3 853 -4162 bp Feature: gene Location: 4544-5031 bp Feature: gene Location: 5050-5547 bp Ori: PLS63356.1 Feature: domain Description: Bac_Flav_CT_N Location: 5053-5128 bp Feature: domain Description: Bac_Flav_CT_N Location: 5053 -5128 bp Feature: domain Description: Bac_Flav_CT_N Location: 5263-5527 bp Feature: domain Description: Bac_Flav_CT_N Location: 5263 -5527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: MKXL02000071.1 Bacteroides fragilis strain 14-106904-1 14-106904-1_S15_L001_R1_001_15_P_trim_contig_71, whole genome shotgun sequence (2506 bp)
Overview 1 RT 1: 514-1958 bp Neighborhood of RT #1 [514, 2353] RVT_N RVT-GII GIIM Feature: gene Location: 514-717 bp Feature: gene Location: 683-2353 bp Ori: PLS62987.1 Gene: ltrA Feature: domain Description: RVT_N Location: 737-980 bp Feature: domain Description: RVT_N Location: 737-980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025-1673 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1958 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: MKXL02000037.1 Bacteroides fragilis strain 14-106904-1 14-106904-1_S15_L001_R1_001_15_P_trim_contig_37, whole genome shotgun sequence (117009 bp)
Overview 1 RT 1: 10820-14889 bp Neighborhood of RT #1 [10820, 14966] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 10820-11062 bp Feature: gene Location: 11265-11750 bp Feature: gene Location: 11747-13048 bp Ori: PLS64053.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11960-12554 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11960-125 5 4 bp Feature: gene Location: 13424-13657 bp Feature: gene Location: 13755-14966 bp Ori: PLS64055.1 Feature: domain Description: TipAS Location: 13779-14082 bp Feature: domain Description: TipAS Location: 13779-14082 bp Feature: domain Description: COG2369 Location: 14202-14388 bp Feature: domain Description: COG2369 Location: 14202-14388 bp Feature: domain Description: LPD3 Location: 14607-14889 bp Feature: domain Description: LPD3 Location: 14607-14889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)

Seq: MKXL02000030.1 Bacteroides fragilis strain 14-106904-1 14-106904-1_S15_L001_R1_001_15_P_trim_contig_30, whole genome shotgun sequence (98212 bp)
Overview 1 RT 1: 28735-31908 bp Neighborhood of RT #1 [28735, 31908] NHL 7WD40 RVT_N RVT-GII RVT-GII HTH_28 Feature: gene Location: 28735-29790 bp Ori: PLS64416.1 Feature: domain Description: NHL Location: 28957-29323 bp Feature: domain Description: NHL Location: 28957-29323 bp Feature: domain Description: 7WD40 Location: 29374-29755 bp Feature: domain Description: 7WD40 Location: 29374-29755 bp Feature: gene Location: 30363-30599 bp Feature: gene Location: 30613-30990 bp Ori: PLS64418.1 Feature: domain Description: RVT_N Location: 30616-30841 bp Feature: domain Description: RVT_N Location: 306 16 -30841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30895-30964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30895-3096 4 bp Feature: gene Location: 30968-31165 bp Ori: PLS64419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30971-31163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30971-3116 3 bp Feature: gene Location: 31286-31576 bp Ori: PLS64420.1 Feature: domain Description: HTH_28 Location: 31310-31457 bp Feature: domain Description: HTH_28 Location: 31310-31457 bp Feature: gene Location: 31720-31908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518)