myRT

myRT report for GCA_001816245.2_ASM181624v2

Download annotations/find similar RTs

Seq: MKXM02000019.1 Bacteroides thetaiotaomicron strain 14-106904-2 14-106904-2_S16_L001_R1_001_16_CLC_contig_19, whole genome shotgun sequence (131123 bp)
Overview 1 RT 1: 7182-12158 bp Neighborhood of RT #1 [7182, 12172] DUF3875 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 7182-7352 bp Ori: PLS61602.1 Feature: domain Description: DUF3875 Location: 7191-7347 bp Feature: domain Description: DUF3875 Location: 71 91 -7347 bp Feature: gene Location: 7371-9278 bp Ori: PLS61603.1 Feature: domain Description: Bac_Flav_CT_G Location: 7374-9264 bp Feature: domain Description: Bac_Flav_CT_G Location: 7374-9264 bp Feature: gene Location: 9825-11636 bp Ori: PLS61604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10089-10911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0089-1 091 1 bp Feature: domain Description: Intron_maturas2 Location: 10986-11301 bp Feature: domain Description: Intron_maturas2 Location: 1 0986-1 1 301 bp Feature: domain Description: HNHc Note: nucleases Location: 11457-11607 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 457-1 1 607 bp Feature: gene Location: 11714-11992 bp Ori: PLS61605.1 Feature: domain Description: Bac_Flav_CT_G Location: 11732-11990 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 732-1 1 990 bp Feature: gene Location: 11999-12172 bp Ori: PLS61606.1 Feature: domain Description: Bac_Flav_CT_G Location: 12002-12158 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 2002-1 21 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: MKXM02000093.1 Bacteroides thetaiotaomicron strain 14-106904-2 14-106904-2_S16_L001_R1_001_16_CLC_contig_93, whole genome shotgun sequence (40034 bp)
Overview 1 RT 1: 22307-29605 bp Neighborhood of RT #1 [22307, 29814] SusD Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 DUF2971 Feature: gene Location: 22307-24025 bp Ori: PLS58342.1 Feature: domain Description: SusD Location: 22703-23897 bp Feature: domain Description: SusD Location: 2 2 703-2 3897 bp Feature: gene Location: 24592-25761 bp Ori: PLS58350.1 Feature: domain Description: Arm-DNA-bind_5 Location: 24622-24877 bp Feature: domain Description: Arm-DNA-bind_5 Location: 2 462 2 -2 4877 bp Feature: domain Description: Phage_int_SAM_5 Location: 24916-25237 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 4916-2 52 37 bp Feature: domain Description: INTN1_C_like Location: 25276-25744 bp Feature: domain Description: INTN1_C_like Location: 2 52 76-2 5744 bp Feature: gene Location: 26308-28116 bp Ori: PLS58343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26572-27394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6572 -2 7394 bp Feature: domain Description: Intron_maturas2 Location: 27505-27775 bp Feature: domain Description: Intron_maturas2 Location: 2 7505-2 7775 bp Feature: gene Location: 28331-28693 bp Ori: PLS58344.1 Feature: domain Description: COG3943 Location: 28370-28622 bp Feature: domain Description: COG3943 Location: 2 8370-2 862 2 bp Feature: gene Location: 28801-29814 bp Ori: PLS58351.1 Feature: domain Description: DUF2971 Location: 29350-29605 bp Feature: domain Description: DUF2 971 Location: 2 9350-2 9605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), DUF2971 (pfam11185)

Seq: MKXM02000092.1 Bacteroides thetaiotaomicron strain 14-106904-2 14-106904-2_S16_L001_R1_001_16_CLC_contig_92, whole genome shotgun sequence (116792 bp)
Overview 1 RT 1: 49546-60978 bp Neighborhood of RT #1 [49546, 61094] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Feature: gene Location: 49546-49806 bp Feature: gene Location: 49766-51925 bp Feature: gene Location: 52131-53264 bp Ori: PLS58392.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52455-53007 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52455-53 007 bp Feature: gene Location: 53298-59126 bp Ori: PLS58393.1 Feature: domain Description: DUF4011 Location: 54453-54966 bp Feature: domain Description: DUF4011 Location: 54453 -54966 bp Feature: domain Description: DEXXQc_SF1 Location: 55305-55848 bp Feature: domain Description: DEXXQc_SF1 Location: 553 05-55848 bp Feature: domain Description: DEXXQc_SF1 Location: 56742-57492 bp Feature: domain Description: DEXXQc_SF1 Location: 56742-57492 bp Feature: domain Description: SF1_C_Upf1 Location: 57501-58014 bp Feature: domain Description: SF1_C_Upf1 Location: 57501-58014 bp Feature: domain Description: MTES_1575 Location: 58164-58452 bp Feature: domain Description: MTES_1575 Location: 58164-58452 bp Feature: domain Description: DUF3320 Location: 58632-58776 bp Feature: domain Description: DUF3 3 20 Location: 5863 2-58776 bp Feature: gene Location: 59295-61094 bp Ori: PLS58394.1 Feature: domain Description: rpsA Location: 59364-60978 bp Feature: domain Description: rpsA Location: 593 64-60978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: MKXM02000022.1 Bacteroides thetaiotaomicron strain 14-106904-2 14-106904-2_S16_L001_R1_001_16_CLC_contig_22, whole genome shotgun sequence (64366 bp)
Overview 1 RT 1: 1715-5502 bp Neighborhood of RT #1 [1715, 5648] RVT-GII GIIM RVT-GII KOG1378 Feature: gene Location: 1715-1921 bp Feature: gene Location: 2057-2314 bp Feature: gene Location: 2414-3103 bp Ori: PLS61499.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2435-2834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 35-2834 bp Feature: domain Description: GIIM Note: maturase Location: 2849-3080 bp Feature: domain Description: GIIM Note: maturase Location: 284 9-3080 bp Feature: gene Location: 3106-3594 bp Ori: PLS61500.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3442-3580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 4 2-3580 bp Feature: gene Location: 3884-4141 bp Feature: gene Location: 4479-5648 bp Ori: PLS61502.1 Feature: domain Description: KOG1378 Location: 4590-5502 bp Feature: domain Description: KOG1378 Location: 4 590-5502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1378 (KOG1378, Purple acid phosphatase )

Seq: MKXM02000036.1 Bacteroides thetaiotaomicron strain 14-106904-2 14-106904-2_S16_L001_R1_001_16_CLC_contig_36, whole genome shotgun sequence (84321 bp)
Overview 1 RT 1: 55416-59679 bp Neighborhood of RT #1 [55416, 59690] GDPD_like_2 RVT_N RVT-GII RVT-GII HTH_28 Mfa_like_1 DUF1566 Feature: gene Location: 55416-56165 bp Ori: PLS60738.1 Feature: domain Description: GDPD_like_2 Location: 55473-56130 bp Feature: domain Description: GDPD_like_2 Location: 5 5 473-5 6130 bp Feature: gene Location: 56860-57096 bp Feature: gene Location: 57110-57487 bp Ori: PLS60740.1 Feature: domain Description: RVT_N Location: 57113-57338 bp Feature: domain Description: RVT_N Location: 5 7113-5 7338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57392-57461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7392-5 7461 bp Feature: gene Location: 57465-57662 bp Ori: PLS60741.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 57468-57660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 7468-5 7660 bp Feature: gene Location: 57783-58073 bp Ori: PLS60742.1 Feature: domain Description: HTH_28 Location: 57807-57951 bp Feature: domain Description: HTH_28 Location: 5 7807-5 795 1 bp Feature: gene Location: 58410-59690 bp Ori: PLS60743.1 Feature: domain Description: Mfa_like_1 Location: 58482-58893 bp Feature: domain Description: Mfa_like_1 Location: 5 8482-5 8893 bp Feature: domain Description: DUF1566 Location: 59379-59679 bp Feature: domain Description: DUF15 66 Location: 5 9379-5 9679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDPD_like_2 (cd08582), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518), Mfa_like_1 (pfam13149), DUF1566 (pfam07603)

Seq: MKXM02000020.1 Bacteroides thetaiotaomicron strain 14-106904-2 14-106904-2_S16_L001_R1_001_16_CLC_contig_20, whole genome shotgun sequence (2527 bp)
Overview 1 RT 1: 1-1903 bp Neighborhood of RT #1 [1, 1941] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-114 bp Feature: gene Location: 118-1941 bp Ori: PLS61590.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: domain Description: Intron_maturas2 Location: 1378-1621 bp Feature: domain Description: Intron_maturas2 Location: 1378-16 21 bp Feature: domain Description: HNHc Note: nucleases Location: 1732-1903 bp Feature: domain Description: HNHc Note: nucleases Location: 1732-1903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)