myRT

myRT report for GCA_001816295.1_ASM181629v1

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Seq: KV825513.1 Escherichia coli strain LCT-ECM001 genomic scaffold Scaffold7, whole genome shotgun sequence (206516 bp)
Overview 1 RT 1: 855-4325 bp Neighborhood of RT #1 [855, 4432] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 855-1157 bp Feature: domain Description: Arm-DNA-bind_3 Location: 864-1116 bp Feature: domain Description: Arm-DNA-bind_3 Location: 864-1 1 1 6 bp Feature: gene Location: 1341-1586 bp Feature: gene Location: 1612-2544 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1714-2308 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 71 4-2308 bp Feature: gene Location: 2546-3532 bp Feature: gene Location: 4160-4432 bp Feature: domain Description: PRK09678 Location: 4169-4325 bp Feature: domain Description: PRK09678 Location: 41 69-4325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: KV825532.1 Escherichia coli strain LCT-ECM001 genomic scaffold Scaffold31, whole genome shotgun sequence (49733 bp)
Overview 1 RT 1: 521-4547 bp Neighborhood of RT #1 [521, 4549] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 521-2125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 812-1403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 812 -1403 bp Feature: domain Description: TIR_2 Location: 1730-2063 bp Feature: domain Description: TIR_2 Location: 1730-2 063 bp Feature: gene Location: 2483-2743 bp Feature: domain Description: PRK10597 Location: 2486-2726 bp Feature: domain Description: PRK10597 Location: 2 486-2 72 6 bp Feature: gene Location: 2963-4549 bp Feature: domain Description: prfC Location: 2981-4547 bp Feature: domain Description: prfC Location: 2 981-4547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)

Seq: JPQS01000327.1 Escherichia coli strain LCT-ECM001 Scaffold88_1, whole genome shotgun sequence (2411 bp)
Overview 1 RT 1: 652-2284 bp Neighborhood of RT #1 [652, 2319] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 652-2319 bp Feature: RT Description: RVT_N Location: 700-937 bp Feature: RT Description: RVT_N Location: 700-93 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-1630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988-163 0 bp Feature: domain Description: GIIM Note: maturase Location: 1681-1915 bp Feature: domain Description: GIIM Note: maturase Location: 1681-1915 bp Feature: domain Description: HNHc Note: nucleases Location: 2125-2284 bp Feature: domain Description: HNHc Note: nucleases Location: 2125-2284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)