myRT

myRT report for GCA_001816315.1_ASM181631v1

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Seq: KV825572.1 Escherichia coli strain LCT-ECS001 genomic scaffold Scaffold7, whole genome shotgun sequence (206630 bp)
Overview 1 RT 1: 853-4323 bp Neighborhood of RT #1 [853, 4430] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 853-1155 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1114 bp Feature: domain Description: Arm-DNA-bind_3 Location: 862-1 1 1 4 bp Feature: gene Location: 1339-1584 bp Feature: gene Location: 1610-2542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1712-2306 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 71 2-2306 bp Feature: gene Location: 2544-3530 bp Feature: gene Location: 4158-4430 bp Feature: domain Description: PRK09678 Location: 4167-4323 bp Feature: domain Description: PRK09678 Location: 41 67-4323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)

Seq: JPRV01000049.1 Escherichia coli strain LCT-ECS001 Scaffold31_1, whole genome shotgun sequence (49713 bp)
Overview 1 RT 1: 519-4545 bp Neighborhood of RT #1 [519, 4547] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 519-2123 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 810-1401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 810-1401 bp Feature: domain Description: TIR_2 Location: 1728-2061 bp Feature: domain Description: TIR_2 Location: 172 8-2 061 bp Feature: gene Location: 2481-2741 bp Feature: domain Description: PRK10597 Location: 2484-2724 bp Feature: domain Description: PRK10597 Location: 2 484-2 72 4 bp Feature: gene Location: 2961-4547 bp Feature: domain Description: prfC Location: 2979-4545 bp Feature: domain Description: prfC Location: 2 979-4545 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)

Seq: KV825589.1 Escherichia coli strain LCT-ECS001 genomic scaffold Scaffold77, whole genome shotgun sequence (3191 bp)
Overview 1 RT 1: 81-3064 bp Neighborhood of RT #1 [81, 3099] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 81-227 bp Feature: gene Location: 1432-3099 bp Feature: RT Description: RVT_N Location: 1480-1717 bp Feature: RT Description: RVT_N Location: 1480-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768-2410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1768-2410 bp Feature: domain Description: GIIM Note: maturase Location: 2461-2695 bp Feature: domain Description: GIIM Note: maturase Location: 2461-2695 bp Feature: domain Description: HNHc Note: nucleases Location: 2905-3064 bp Feature: domain Description: HNHc Note: nucleases Location: 2905-3 064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)