myRT

myRT report for GCA_001828795.1_ASM182879v1

Download annotations/find similar RTs

Seq: MHZO01000005.1 Pseudomonadales bacterium RIFCSPLOWO2_12_60_38 rifcsplowo2_12_sub10_scaffold_12, whole genome shotgun sequence (105423 bp)
Overview 1 RT 1: 71130-74476 bp Neighborhood of RT #1 [71130, 74476] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 71130-71750 bp Feature: domain Description: DUF1566 Location: 71376-71733 bp Feature: domain Description: DUF1 566 Location: 71 376-71 733 bp Feature: gene Location: 71805-72161 bp Feature: domain Description: Avd_like Location: 71832-72138 bp Feature: domain Description: Avd_like Location: 71 832-721 38 bp Feature: gene Location: 72443-73534 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 72626-73310 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 72626-7331 0 bp Feature: gene Location: 73579-74136 bp Feature: gene Location: 74228-74476 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: MHZO01000001.1 Pseudomonadales bacterium RIFCSPLOWO2_12_60_38 rifcsplowo2_12_sub10_scaffold_0, whole genome shotgun sequence (718349 bp)
Overview 1 RT 1: 18374-25330 bp Neighborhood of RT #1 [18374, 25330] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM ACR3 Feature: gene Location: 18374-18709 bp Feature: domain Description: TnpB_IS66 Location: 18392-18680 bp Feature: domain Description: TnpB_IS66 Location: 18392 -18680 bp Feature: gene Location: 18771-20078 bp Feature: domain Description: LZ_Tnp_IS66 Location: 18903-19110 bp Feature: domain Description: LZ_Tnp_IS66 Location: 18903-19110 bp Feature: domain Description: zf-IS66 Location: 19149-19263 bp Feature: domain Description: zf-IS66 Location: 19149-192 63 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19305-20079 bp Feature: domain Description: DDE_Tnp_IS66 Location: 19305-2 0079 bp Feature: gene Location: 20657-22318 bp Feature: RT Description: RVT_N Location: 20702-20945 bp Feature: RT Description: RVT_N Location: 2 0702 -2 0945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20990-21626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0990-2 162 6 bp Feature: domain Description: GIIM Note: maturase Location: 21683-21911 bp Feature: domain Description: GIIM Note: maturase Location: 2 1683-2 1911 bp Feature: gene Location: 22683-23645 bp Feature: domain Description: ACR3 Location: 22698-23625 bp Feature: domain Description: ACR3 Location: 2 2 698-2 362 5 bp Feature: gene Location: 25040-25330 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ACR3 (COG0798)

Seq: MHZO01000023.1 Pseudomonadales bacterium RIFCSPLOWO2_12_60_38 rifcsplowo2_12_sub10_scaffold_28, whole genome shotgun sequence (121237 bp)
Overview 1 RT 1: 1-5227 bp Neighborhood of RT #1 [1, 5424] RVT-GII GIIM CHD CHD Feature: gene Location: 1-124 bp Feature: gene Location: 617-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83 0-1487 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1787 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1787 bp Feature: gene Location: 2035-2361 bp Feature: gene Location: 3880-5424 bp Feature: domain Description: CHD Location: 4096-4510 bp Feature: domain Description: CHD Location: 4096-4510 bp Feature: domain Description: CHD Location: 4738-5227 bp Feature: domain Description: CHD Location: 473 8-5227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)