myRT

myRT report for GCA_001832545.1_ASM183254v1

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Seq: MLZF01000013.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045022 CFSAN045022_13, whole genome shotgun sequence (103038 bp)
Overview 1 RT 1: 80176-84011 bp Neighborhood of RT #1 [80176, 84011] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 80176-80463 bp Feature: gene Location: 80557-80826 bp Ori: OHG74785.1 Feature: domain Description: HTH_XRE Location: 80572-80674 bp Feature: domain Description: HTH_XRE Location: 80572-80674 bp Feature: gene Location: 81072-82745 bp Ori: OHG74786.1 Feature: domain Description: RVT_N Location: 81132-81375 bp Feature: domain Description: RVT_N Location: 81 1 32-81 375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81420-82062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 420-82062 bp Feature: domain Description: YkfC Location: 82191-82362 bp Feature: domain Description: YkfC Location: 821 91 -82362 bp Feature: domain Description: HNHc Note: nucleases Location: 82560-82722 bp Feature: domain Description: HNHc Note: nucleases Location: 82560-82722 bp Feature: gene Location: 83302-83481 bp Ori: OHG74787.1 Feature: domain Description: PRK09738 Location: 83305-83458 bp Feature: domain Description: PRK09738 Location: 83305-83458 bp Feature: gene Location: 83685-84011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: MLZF01000007.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045022 CFSAN045022_7, whole genome shotgun sequence (342422 bp)
Overview 1 RT 1: 90657-96939 bp Neighborhood of RT #1 [90657, 96941] PRK09678 RVT-UG3 RVT-UG8 PRK15246 Feature: gene Location: 90657-91418 bp Feature: gene Location: 91418-91690 bp Ori: OHG77857.1 Feature: domain Description: PRK09678 Location: 91427-91586 bp Feature: domain Description: PRK09678 Location: 9142 7-91586 bp Feature: gene Location: 92077-93354 bp Ori: OHG77858.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92365-92860 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92 365-92 860 bp Feature: gene Location: 93345-95363 bp Ori: OHG77859.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93918-94371 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93918-94371 bp Feature: gene Location: 95941-96135 bp Feature: gene Location: 96183-96941 bp Ori: OHG77861.1 Feature: domain Description: PRK15246 Location: 96243-96939 bp Feature: domain Description: PRK152 46 Location: 962 43-96939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, PRK15246 (fimbrial assembly chaperone)