myRT

myRT report for GCA_001832725.1_ASM183272v1

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Seq: MLXO01000014.1 Salmonella enterica subsp. diarizonae serovar 59:[k]:z35 strain CFSAN044910 CFSAN044910_14, whole genome shotgun sequence (149620 bp)
Overview 1 RT 1: 141152-144996 bp Neighborhood of RT #1 [141152, 144996] PRK10947 RVT-Retrons PRK10947 Feature: gene Location: 141152-141556 bp Ori: OHF46678.1 Feature: domain Description: PRK10947 Location: 141155-141548 bp Feature: domain Description: PRK1 0947 Location: 1 41 1 55-1 41 548 bp Feature: gene Location: 141748-142626 bp Feature: gene Location: 142936-143865 bp Ori: OHF46680.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 143092-143641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 43092-1 43641 bp Feature: gene Location: 144339-144599 bp Ori: OHF46681.1 Feature: domain Description: PRK10947 Location: 144354-144576 bp Feature: domain Description: PRK1 0947 Location: 1 44354-1 44576 bp Feature: gene Location: 144700-144996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10947 (DNA-binding transcriptional regulator H-NS), RVT-Retrons

Seq: MLXO01000004.1 Salmonella enterica subsp. diarizonae serovar 59:[k]:z35 strain CFSAN044910 CFSAN044910_4, whole genome shotgun sequence (292079 bp)
Overview 1 RT 1: 257492-263049 bp Neighborhood of RT #1 [257492, 263063] RVT-UG4 PRK15223 FimC Feature: gene Location: 257492-257860 bp Feature: gene Location: 258218-258703 bp Feature: gene Location: 258748-259722 bp Ori: OHF51941.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 259102-259549 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 59102 -2 59549 bp Feature: gene Location: 259740-262253 bp Ori: OHF51942.1 Feature: domain Description: PRK15223 Location: 259749-262251 bp Feature: domain Description: PRK152 2 3 Location: 2 59749-2 62 2 51 bp Feature: gene Location: 262380-263063 bp Ori: OHF51988.1 Feature: domain Description: FimC Location: 262392-263049 bp Feature: domain Description: FimC Location: 2 62 392 -2 63049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, PRK15223 (fimbrial biogenesis outer membrane usher protein), FimC (COG3121)

Seq: MLXO01000025.1 Salmonella enterica subsp. diarizonae serovar 59:[k]:z35 strain CFSAN044910 CFSAN044910_25, whole genome shotgun sequence (66141 bp)
Overview 1 RT 1: 21815-27423 bp Neighborhood of RT #1 [21815, 27428] INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII GIIM GanA Feature: gene Location: 21815-22792 bp Ori: OHF43530.1 Feature: domain Description: INT_RitB_C_like Location: 22148-22730 bp Feature: domain Description: INT_RitB_C_like Location: 22148-2273 0 bp Feature: gene Location: 22792-23691 bp Ori: OHF43531.1 Feature: domain Description: Phage_int_SAM_4 Location: 23131-23350 bp Feature: domain Description: Phage_int_SAM_4 Location: 23 13 1-23 3 50 bp Feature: domain Description: INT_RitA_C_like Location: 23362-23656 bp Feature: domain Description: INT_RitA_C_like Location: 23 3 62-23 656 bp Feature: gene Location: 23883-24620 bp Ori: OHF43532.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23913-24099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 913 -24099 bp Feature: domain Description: GIIM Note: maturase Location: 24153-24387 bp Feature: domain Description: GIIM Note: maturase Location: 24153 -243 87 bp Feature: gene Location: 24753-24863 bp Feature: gene Location: 25380-27428 bp Ori: OHF43534.1 Feature: domain Description: GanA Location: 25413-27423 bp Feature: domain Description: GanA Location: 25413 -27423 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), GanA (COG1874)