myRT

myRT report for GCA_001833595.1_ASM183359v1

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Seq: MLTY01000022.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN044951 CFSAN044951_22, whole genome shotgun sequence (82076 bp)
Overview 1 RT 1: 21814-27480 bp Neighborhood of RT #1 [21814, 27485] INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII GIIM Transposase_20 GanA Feature: gene Location: 21814-22791 bp Ori: OHK42266.1 Feature: domain Description: INT_RitB_C_like Location: 22147-22729 bp Feature: domain Description: INT_RitB_C_like Location: 221 47-22729 bp Feature: gene Location: 22791-23690 bp Ori: OHK42267.1 Feature: domain Description: Phage_int_SAM_4 Location: 23130-23349 bp Feature: domain Description: Phage_int_SAM_4 Location: 231 30-23349 bp Feature: domain Description: INT_RitA_C_like Location: 23361-23655 bp Feature: domain Description: INT_RitA_C_like Location: 23361 -23655 bp Feature: gene Location: 23882-24619 bp Ori: OHK42268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23912-24098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2391 2-24098 bp Feature: domain Description: GIIM Note: maturase Location: 24152-24386 bp Feature: domain Description: GIIM Note: maturase Location: 241 52-24386 bp Feature: gene Location: 24956-25288 bp Feature: domain Description: Transposase_20 Location: 24974-25157 bp Feature: domain Description: Transposase_20 Location: 24974-251 57 bp Feature: gene Location: 25437-27485 bp Ori: OHK42269.1 Feature: domain Description: GanA Location: 25470-27480 bp Feature: domain Description: GanA Location: 25470-27480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), Transposase_20 (pfam02371), GanA (COG1874)

Seq: MLTY01000006.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN044951 CFSAN044951_6, whole genome shotgun sequence (292955 bp)
Overview 1 RT 1: 200351-205854 bp Neighborhood of RT #1 [200351, 205854] FimC PRK15223 RVT-UG4 Feature: gene Location: 200351-201142 bp Ori: OHK48183.1 Feature: domain Description: FimC Location: 200432-201128 bp Feature: domain Description: FimC Location: 2 00432 -2 0112 8 bp Feature: gene Location: 201269-203782 bp Ori: OHK48184.1 Feature: domain Description: PRK15223 Location: 201278-203780 bp Feature: domain Description: PRK152 2 3 Location: 2 012 78-2 03780 bp Feature: gene Location: 203800-204774 bp Ori: OHK48185.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 204154-204601 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 04154-2 04601 bp Feature: gene Location: 204820-205302 bp Feature: gene Location: 205348-205854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-UG4