myRT

myRT report for GCA_001834655.1_ASM183465v1

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Seq: MLWS01000015.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045049 CFSAN045049_15, whole genome shotgun sequence (103044 bp)
Overview 1 RT 1: 80176-84011 bp Neighborhood of RT #1 [80176, 84011] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 80176-80463 bp Feature: gene Location: 80557-80826 bp Ori: OHN65353.1 Feature: domain Description: HTH_XRE Location: 80572-80674 bp Feature: domain Description: HTH_XRE Location: 80572-80674 bp Feature: gene Location: 81072-82745 bp Ori: OHN65354.1 Feature: domain Description: RVT_N Location: 81132-81375 bp Feature: domain Description: RVT_N Location: 81 1 32-81 375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81420-82062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 420-82062 bp Feature: domain Description: YkfC Location: 82191-82362 bp Feature: domain Description: YkfC Location: 821 91 -82362 bp Feature: domain Description: HNHc Note: nucleases Location: 82560-82722 bp Feature: domain Description: HNHc Note: nucleases Location: 82560-82722 bp Feature: gene Location: 83302-83481 bp Ori: OHN65355.1 Feature: domain Description: PRK09738 Location: 83305-83458 bp Feature: domain Description: PRK09738 Location: 83305-83458 bp Feature: gene Location: 83685-84011 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: MLWS01000006.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045049 CFSAN045049_6, whole genome shotgun sequence (339846 bp)
Overview 1 RT 1: 242906-249190 bp Neighborhood of RT #1 [242906, 249190] PRK15246 RVT-UG8 RVT-UG3 PRK09678 Feature: gene Location: 242906-243664 bp Ori: OHN68797.1 Feature: domain Description: PRK15246 Location: 242966-243662 bp Feature: domain Description: PRK152 46 Location: 2 42 966-2 43662 bp Feature: gene Location: 243712-243906 bp Feature: gene Location: 244484-246502 bp Ori: OHN68799.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 245057-245510 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 45057-2 45510 bp Feature: gene Location: 246493-247770 bp Ori: OHN68800.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 246781-247276 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 46781-2 472 76 bp Feature: gene Location: 248157-248429 bp Ori: OHN68801.1 Feature: domain Description: PRK09678 Location: 248166-248325 bp Feature: domain Description: PRK09678 Location: 2 48166-2 4832 5 bp Feature: gene Location: 248429-249190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15246 (fimbrial assembly chaperone), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional)