myRT

myRT report for GCA_001835085.1_ASM183508v1

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Seq: MLUE01000006.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN044958 CFSAN044958_6, whole genome shotgun sequence (313902 bp)
Overview 1 RT 1: 200361-205864 bp Neighborhood of RT #1 [200361, 205864] FimC PRK15223 RVT-UG4 Feature: gene Location: 200361-201152 bp Ori: OHK70907.1 Feature: domain Description: FimC Location: 200442-201138 bp Feature: domain Description: FimC Location: 200442-201 1 38 bp Feature: gene Location: 201279-203792 bp Ori: OHK70908.1 Feature: domain Description: PRK15223 Location: 201288-203790 bp Feature: domain Description: PRK1 5223 Location: 201 288-203790 bp Feature: gene Location: 203810-204784 bp Ori: OHK70909.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 204164-204611 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2041 64-20461 1 bp Feature: gene Location: 204830-205312 bp Feature: gene Location: 205358-205864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), PRK15223 (fimbrial biogenesis outer membrane usher protein), RVT-UG4

Seq: MLUE01000021.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN044958 CFSAN044958_21, whole genome shotgun sequence (82076 bp)
Overview 1 RT 1: 21814-27480 bp Neighborhood of RT #1 [21814, 27485] INT_RitB_C_like Phage_int_SAM_4 INT_RitA_C_like RVT-GII GIIM Transposase_20 GanA Feature: gene Location: 21814-22791 bp Ori: OHK67627.1 Feature: domain Description: INT_RitB_C_like Location: 22147-22729 bp Feature: domain Description: INT_RitB_C_like Location: 2 2 147-2 2 72 9 bp Feature: gene Location: 22791-23690 bp Ori: OHK67628.1 Feature: domain Description: Phage_int_SAM_4 Location: 23130-23349 bp Feature: domain Description: Phage_int_SAM_4 Location: 2 3130-2 3349 bp Feature: domain Description: INT_RitA_C_like Location: 23361-23655 bp Feature: domain Description: INT_RitA_C_like Location: 2 3361-2 3655 bp Feature: gene Location: 23882-24619 bp Ori: OHK67629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23912-24098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3912 -2 4098 bp Feature: domain Description: GIIM Note: maturase Location: 24152-24386 bp Feature: domain Description: GIIM Note: maturase Location: 2 4152 -2 4386 bp Feature: gene Location: 24956-25288 bp Feature: domain Description: Transposase_20 Location: 24974-25157 bp Feature: domain Description: Transposase_2 0 Location: 2 4974-2 5157 bp Feature: gene Location: 25437-27485 bp Ori: OHK67630.1 Feature: domain Description: GanA Location: 25470-27480 bp Feature: domain Description: GanA Location: 2 5470-2 7480 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), RVT-GII, GIIM (pfam08388), Transposase_20 (pfam02371), GanA (COG1874)