myRT

myRT report for GCA_001835305.1_ASM183530v1

Download annotations/find similar RTs

Seq: MLVX01000006.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045017 CFSAN045017_6, whole genome shotgun sequence (339846 bp)
Overview 1 RT 1: 90658-96940 bp Neighborhood of RT #1 [90658, 96942] PRK09678 RVT-UG3 RVT-UG8 PRK15246 Feature: gene Location: 90658-91419 bp Feature: gene Location: 91419-91691 bp Ori: OHM78115.1 Feature: domain Description: PRK09678 Location: 91428-91587 bp Feature: domain Description: PRK09678 Location: 91 428-91 587 bp Feature: gene Location: 92078-93355 bp Ori: OHM78116.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92366-92861 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92366-92861 bp Feature: gene Location: 93346-95364 bp Ori: OHM78117.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93919-94372 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 9391 9-94372 bp Feature: gene Location: 95942-96136 bp Feature: gene Location: 96184-96942 bp Ori: OHM78119.1 Feature: domain Description: PRK15246 Location: 96244-96940 bp Feature: domain Description: PRK1 5246 Location: 96244-96940 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, PRK15246 (fimbrial assembly chaperone)

Seq: MLVX01000014.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045017 CFSAN045017_14, whole genome shotgun sequence (102348 bp)
Overview 1 RT 1: 79498-83333 bp Neighborhood of RT #1 [79498, 83333] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 79498-79785 bp Feature: gene Location: 79879-80148 bp Ori: OHM74730.1 Feature: domain Description: HTH_XRE Location: 79894-79996 bp Feature: domain Description: HTH_XRE Location: 79894-79996 bp Feature: gene Location: 80394-82067 bp Ori: OHM74731.1 Feature: domain Description: RVT_N Location: 80454-80697 bp Feature: domain Description: RVT_N Location: 80454-80697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80742-81384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80742 -81384 bp Feature: domain Description: YkfC Location: 81513-81684 bp Feature: domain Description: YkfC Location: 81513-81684 bp Feature: domain Description: HNHc Note: nucleases Location: 81882-82044 bp Feature: domain Description: HNHc Note: nucleases Location: 81882 -82 044 bp Feature: gene Location: 82624-82803 bp Ori: OHM74732.1 Feature: domain Description: PRK09738 Location: 82627-82780 bp Feature: domain Description: PRK09738 Location: 82 62 7-82 780 bp Feature: gene Location: 83007-83333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)