myRT

myRT report for GCA_001835405.1_ASM183540v1

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Seq: MLWD01000015.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045027 CFSAN045027_15, whole genome shotgun sequence (103026 bp)
Overview 1 RT 1: 80158-83993 bp Neighborhood of RT #1 [80158, 83993] HTH_XRE RVT_N RVT-GII YkfC HNHc PRK09738 Feature: gene Location: 80158-80445 bp Feature: gene Location: 80539-80808 bp Ori: OHM99874.1 Feature: domain Description: HTH_XRE Location: 80554-80656 bp Feature: domain Description: HTH_XRE Location: 80554-80656 bp Feature: gene Location: 81054-82727 bp Ori: OHM99875.1 Feature: domain Description: RVT_N Location: 81114-81357 bp Feature: domain Description: RVT_N Location: 81 1 1 4-81 357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81402-82044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 402-82044 bp Feature: domain Description: YkfC Location: 82173-82344 bp Feature: domain Description: YkfC Location: 821 73-82344 bp Feature: domain Description: HNHc Note: nucleases Location: 82542-82704 bp Feature: domain Description: HNHc Note: nucleases Location: 82542-82704 bp Feature: gene Location: 83284-83463 bp Ori: OHM99876.1 Feature: domain Description: PRK09738 Location: 83287-83440 bp Feature: domain Description: PRK09738 Location: 83287-83440 bp Feature: gene Location: 83667-83993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), PRK09738 (small toxic polypeptide; Provisional)

Seq: MLWD01000004.1 Salmonella enterica subsp. enterica serovar Rubislaw strain CFSAN045027 CFSAN045027_4, whole genome shotgun sequence (317339 bp)
Overview 1 RT 1: 90657-96939 bp Neighborhood of RT #1 [90657, 96941] PRK09678 RVT-UG3 RVT-UG8 PRK15246 Feature: gene Location: 90657-91418 bp Feature: gene Location: 91418-91690 bp Ori: OHN04662.1 Feature: domain Description: PRK09678 Location: 91427-91586 bp Feature: domain Description: PRK09678 Location: 9142 7-91586 bp Feature: gene Location: 92077-93354 bp Ori: OHN04663.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92365-92860 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 92 365-92 860 bp Feature: gene Location: 93345-95363 bp Ori: OHN04664.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93918-94371 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 93918-94371 bp Feature: gene Location: 95941-96135 bp Feature: gene Location: 96183-96941 bp Ori: OHN04666.1 Feature: domain Description: PRK15246 Location: 96243-96939 bp Feature: domain Description: PRK152 46 Location: 962 43-96939 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8, PRK15246 (fimbrial assembly chaperone)