myRT

myRT report for GCA_001836025.1_ASM183602v1

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Seq: KV826893.1 Aerococcus sp. HMSC035B07 genomic scaffold Scaffold301, whole genome shotgun sequence (131102 bp)
Overview 1 RT 1: 88940-97672 bp Neighborhood of RT #1 [88940, 97698] RMtype1_S_HinAWORF1578P-TRD2-CR2_like RMtype1_S_HinAWORF1578P-TRD2-CR2_like COG0610 RVT-Retrons Strep_his_triad ZinT NlpA Feature: gene Location: 88940-90169 bp Ori: OHO44985.1 Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 88952-89483 bp Feature: domain Description: RMtype1 _S_HinAWORF1 578P-TRD2-CR2_like Location: 88952-89483 bp Feature: domain Description: RMtype1_S_HinAWORF1578P-TRD2-CR2_like Location: 89576-90131 bp Feature: domain Description: RMtype1 _S_HinAWORF1 578P-TRD2-CR2_like Location: 89576-901 31 bp Feature: gene Location: 90182-93289 bp Ori: OHO44961.1 Feature: domain Description: COG0610 Location: 90209-93191 bp Feature: domain Description: COG061 0 Location: 90209-931 91 bp Feature: gene Location: 93365-95122 bp Ori: OHO44962.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93509-94103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 93509-941 03 bp Feature: gene Location: 95558-96484 bp Ori: OHO44963.1 Feature: domain Description: Strep_his_triad Location: 95780-95900 bp Feature: domain Description: Strep_his_triad Location: 95780-95900 bp Feature: domain Description: ZinT Location: 95918-96482 bp Feature: domain Description: ZinT Location: 9591 8-96482 bp Feature: gene Location: 96844-97698 bp Ori: OHO44964.1 Feature: domain Description: NlpA Location: 96847-97672 bp Feature: domain Description: NlpA Location: 96847-97672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_HinAWORF1578P-TRD2-CR2_like (cd17516), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-Retrons, Strep_his_triad (pfam04270), ZinT (pfam09223), NlpA (COG1464)

Seq: KV826880.1 Aerococcus sp. HMSC035B07 genomic scaffold Scaffold93, whole genome shotgun sequence (40023 bp)
Overview 1 RT 1: 2078-8189 bp Neighborhood of RT #1 [2078, 8189] DUF5067 RVT-UG2 Feature: gene Location: 2078-3154 bp Ori: OHO42765.1 Feature: domain Description: DUF5067 Location: 2204-2573 bp Feature: domain Description: DUF5067 Location: 2 2 04-2 573 bp Feature: gene Location: 3623-4509 bp Feature: gene Location: 5275-6636 bp Ori: OHO42766.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5494-6316 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 5494-6316 bp Feature: gene Location: 7404-7628 bp Feature: gene Location: 7758-8189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5067 (pfam16729), RVT-UG2