myRT

myRT report for GCA_001836405.1_ASM183640v1

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Seq: KV828475.1 Pseudomonas sp. HMSC057H01 genomic scaffold Scaffold270, whole genome shotgun sequence (384451 bp)
Overview 1 RT 1: 290177-300910 bp Neighborhood of RT #1 [290177, 300912] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 290177-290512 bp Feature: domain Description: NERD Location: 290276-290447 bp Feature: domain Description: NERD Location: 290276-290447 bp Feature: gene Location: 290605-291726 bp Feature: domain Description: COG3177 Location: 290623-291715 bp Feature: domain Description: COG31 77 Location: 290623-291 71 5 bp Feature: gene Location: 292449-294134 bp Feature: RT Description: RVT_N Location: 292506-292746 bp Feature: RT Description: RVT_N Location: 292506-292746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292794-293430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292794-293430 bp Feature: domain Description: GIIM Note: maturase Location: 293484-293715 bp Feature: domain Description: GIIM Note: maturase Location: 293484-29371 5 bp Feature: domain Description: HNH Note: nucleases Location: 293967-294105 bp Feature: domain Description: HNH Note: nucleases Location: 293967-2941 05 bp Feature: gene Location: 295215-298952 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295323-295980 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 295323-295980 bp Feature: domain Description: PRK09776 Location: 296193-296664 bp Feature: domain Description: PRK09776 Location: 2961 93-296664 bp Feature: domain Description: PAS Location: 296709-297246 bp Feature: domain Description: PAS Location: 296709-297246 bp Feature: domain Description: PRK10060 Location: 297255-298902 bp Feature: domain Description: PRK1 0060 Location: 297255-298902 bp Feature: gene Location: 299059-300912 bp Feature: domain Description: PRK05658 Location: 299071-300910 bp Feature: domain Description: PRK05658 Location: 299071 -30091 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)